Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G384000.3 | Wheat | mitochondrion | 98.86 | 98.86 |
| TraesCS5B01G376300.1 | Wheat | mitochondrion | 98.04 | 98.04 |
| Os03t0645200-01 | Rice | cytosol, plastid | 23.0 | 94.0 |
| HORVU5Hr1G092900.2 | Barley | mitochondrion | 96.74 | 93.09 |
| Zm00001d033223_P003 | Maize | cytosol | 32.14 | 84.55 |
| Zm00001d013692_P001 | Maize | cytosol | 81.4 | 81.94 |
| VIT_14s0083g00170.t01 | Wine grape | cytosol | 59.71 | 74.39 |
| AT2G44070.1 | Thale cress | cytosol | 40.29 | 74.17 |
| EER91168 | Sorghum | plastid | 83.2 | 70.64 |
| GSMUA_Achr4P22890_001 | Banana | cytosol | 70.47 | 65.75 |
| GSMUA_Achr7P01240_001 | Banana | cytosol | 68.68 | 65.17 |
| CDY49077 | Canola | cytosol, plastid | 52.69 | 62.96 |
| CDY01647 | Canola | cytosol | 63.46 | 61.84 |
| CDX74513 | Canola | nucleus | 63.46 | 61.75 |
| Bra028196.1-P | Field mustard | nucleus | 63.3 | 61.59 |
| PGSC0003DMT400026040 | Potato | cytosol | 63.3 | 60.91 |
| Solyc02g089810.2.1 | Tomato | nucleus | 62.97 | 60.6 |
| VIT_17s0000g04230.t01 | Wine grape | plastid | 63.95 | 60.4 |
| AT5G38640.1 | Thale cress | cytosol | 63.13 | 60.28 |
| KRH03820 | Soybean | cytosol, mitochondrion, nucleus, plasma membrane | 54.32 | 60.22 |
| KRH01494 | Soybean | nucleus | 62.32 | 60.06 |
| KRH18264 | Soybean | cytosol | 63.46 | 59.03 |
| KRG93828 | Soybean | endoplasmic reticulum, nucleus | 63.46 | 58.94 |
| PGSC0003DMT400059378 | Potato | cytosol, plastid | 59.22 | 58.55 |
| Solyc12g038340.1.1 | Tomato | nucleus | 58.4 | 57.74 |
| CDY27424 | Canola | cytosol | 11.42 | 57.38 |
| CDX77270 | Canola | mitochondrion | 54.98 | 51.29 |
| CDY16477 | Canola | mitochondrion | 54.98 | 51.29 |
| KRH54799 | Soybean | plastid | 56.93 | 51.17 |
| Bra014165.1-P | Field mustard | mitochondrion | 54.81 | 51.14 |
| AT1G48970.1 | Thale cress | mitochondrion | 53.67 | 49.4 |
| TraesCS5A01G109200.2 | Wheat | cytosol | 13.87 | 23.48 |
| TraesCS1A01G138500.3 | Wheat | plastid | 13.7 | 20.29 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G374400.3 | EnsemblPlantsGene:TraesCS5A01G374400 | Gene3D:3.40.50.10470 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0044237 | InterPro:IF-2B-related | InterPro:NagB/RpiA_transferase-like | KEGG:00270+5.3.1.23 | ncoils:Coil | PANTHER:PTHR10233 |
| PANTHER:PTHR10233:SF29 | PFAM:PF01008 | SEG:seg | SUPFAM:SSF100950 | MapMan:17.4.1.2.3.4 | : |
Description
No Description!
Coordinates
chr5A:+:572824507..572832804
Molecular Weight (calculated)
66479.5 Da
IEP (calculated)
8.868
GRAVY (calculated)
-0.284
Length
613 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLRRPPRST SGGVEPKIRQ VGFVTPGVSA PSEPPAVAAA AVSLPGAAAG SPPASDLSPG SLSPVMIPPP RHVDHLSPDS PSPPASDVLL LASSAPQPSS
101: IRFAAASEFG EEDSRSLAPS AGELETNKGD LAEIRNEDAP VSIPQKQKPS KAERRAIQEA QRAAKAAAKE AGLSGKSTGA ASGANPATSK QAKPAKISQK
201: KDVPHAPSTV ASEKKVTERQ PERDRKKDVP HPRMQFDDVH RVEKAKKRAI VNQSEARNRV ELFRHLPQYV HGTQLPDLES KFFQLEPIHP SVYKVGLQYL
301: SGEVSGGNGR CIAMLLAFRE AIKDYSTPPN KTLSRDLTAK VGSYVSFFIE CRPLSISMGN AIRFLKNRIA KLPITLSESE AKASLQSDID RFINEKIVVA
401: DQVIVSHAIT KVRDDDVLLT YGSSSVVEMF LEHAHELGRK FRVIVVDSRP KLEGQGLLRR LVAKGINCTY THINAVSYIM HEVTRVFLGA SSILSNGTVY
501: SRVGTASVAM VAHAFGIPVL VCCEAYKFDE RVQIDSICAN ELGDPDVISK IPGRADLGDL KNWADNENLQ LLNLTYDATP SDYVSMIITD YGMLPPTSVP
601: VIVREYRKEQ LWV
101: IRFAAASEFG EEDSRSLAPS AGELETNKGD LAEIRNEDAP VSIPQKQKPS KAERRAIQEA QRAAKAAAKE AGLSGKSTGA ASGANPATSK QAKPAKISQK
201: KDVPHAPSTV ASEKKVTERQ PERDRKKDVP HPRMQFDDVH RVEKAKKRAI VNQSEARNRV ELFRHLPQYV HGTQLPDLES KFFQLEPIHP SVYKVGLQYL
301: SGEVSGGNGR CIAMLLAFRE AIKDYSTPPN KTLSRDLTAK VGSYVSFFIE CRPLSISMGN AIRFLKNRIA KLPITLSESE AKASLQSDID RFINEKIVVA
401: DQVIVSHAIT KVRDDDVLLT YGSSSVVEMF LEHAHELGRK FRVIVVDSRP KLEGQGLLRR LVAKGINCTY THINAVSYIM HEVTRVFLGA SSILSNGTVY
501: SRVGTASVAM VAHAFGIPVL VCCEAYKFDE RVQIDSICAN ELGDPDVISK IPGRADLGDL KNWADNENLQ LLNLTYDATP SDYVSMIITD YGMLPPTSVP
601: VIVREYRKEQ LWV
001: MDTRRGALAV PKVRRVGFFT SIEPPPESSL QRPNRSQSGP VDATTSSSPL SDSPSGNLIS PVLIPPSRHH SDNLTSRVAA AAAAPVPVPG PAAFRRYLTP
101: ERTLLHVGSY NPPDSLLGTS SPSSNGGLSE DSASLFGFQR SDSTKLSASL PNGGFDLTLA VRAPQESETK IATTSASQGK KKIAEVSGKS ESATTKPQKE
201: KEPKALKDKT TKAERRAIQE AQRAAKAAAK GEGSRRADES GRANPGKAAI KPQPKKERLP VTSSVSEKTA VAVEKEKRMD VPQTQMQYDD KSRVDKAKRR
301: AVVEQTESKN KVELFLHLPQ YERSNQLPNL SSNFFTLDSI HHAVYKVGLQ HLAGDISGDN ARCIAMLQAF QEAIEDYSTP PMKDLTMDLT AKINGYVSFL
401: IECRPLSMSM GNAIRFLKNQ IRKLPVNLSE SEAKSSLCSD IGRFIDEKTI IADKAIVQHA VTKIRDGEVL LTYGFSCVVE MILLYAHEIG KKFRVVIVDS
501: RPNLEGQKLL RRLVTRGLDC TYTHINAISY IMREATRVFL GASSIYSNGT LYARVGTSCI AMVANAFSVP VIVCCEAYKF HERVLLDSIC SNELGDPDAV
601: ANIPSFRTNA KHSKTMDNNK NLQFLNLMYD STPSEYISMI VSDYGMIPPT SIPVIVREYR RENLLL
101: ERTLLHVGSY NPPDSLLGTS SPSSNGGLSE DSASLFGFQR SDSTKLSASL PNGGFDLTLA VRAPQESETK IATTSASQGK KKIAEVSGKS ESATTKPQKE
201: KEPKALKDKT TKAERRAIQE AQRAAKAAAK GEGSRRADES GRANPGKAAI KPQPKKERLP VTSSVSEKTA VAVEKEKRMD VPQTQMQYDD KSRVDKAKRR
301: AVVEQTESKN KVELFLHLPQ YERSNQLPNL SSNFFTLDSI HHAVYKVGLQ HLAGDISGDN ARCIAMLQAF QEAIEDYSTP PMKDLTMDLT AKINGYVSFL
401: IECRPLSMSM GNAIRFLKNQ IRKLPVNLSE SEAKSSLCSD IGRFIDEKTI IADKAIVQHA VTKIRDGEVL LTYGFSCVVE MILLYAHEIG KKFRVVIVDS
501: RPNLEGQKLL RRLVTRGLDC TYTHINAISY IMREATRVFL GASSIYSNGT LYARVGTSCI AMVANAFSVP VIVCCEAYKF HERVLLDSIC SNELGDPDAV
601: ANIPSFRTNA KHSKTMDNNK NLQFLNLMYD STPSEYISMI VSDYGMIPPT SIPVIVREYR RENLLL
Arabidopsis Description
NagB/RpiA/CoA transferase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I048]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.