Factsheet for Bra028196.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018081.1-P
Bra018126.1-P
Bra027816.1-P
Bra033264.1-P
Bra033769.1-P
Bra037319.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38640.1	Bra033264.1-P	AT1G01440.1	21798944
AT5G38640.1	Bra027816.1-P	AT1G60080.1	21798944
AT5G38640.1	Bra018126.1-P	AT3G47620.1	21798944
AT5G38640.1	Bra018081.1-P	AT3G48150.1	21798944
AT5G38640.1	Bra033769.1-P	AT3G48150.1	21798944
AT5G38640.1	Bra037319.1-P	AT4G00150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74513	Canola	nucleus	99.68	99.68
CDY01647	Canola	cytosol	97.78	97.93
AT5G38640.1	Thale cress	cytosol	91.59	89.88
AT2G44070.1	Thale cress	cytosol	46.67	88.29
Os03t0645200-01	Rice	cytosol, plastid	18.57	78.0
VIT_14s0083g00170.t01	Wine grape	cytosol	60.48	77.44
Zm00001d033223_P003	Maize	cytosol	27.3	73.82
KRH01494	Soybean	nucleus	69.52	68.87
PGSC0003DMT400026040	Potato	cytosol	68.25	67.5
Solyc02g089810.2.1	Tomato	nucleus	67.46	66.72
KRG93828	Soybean	endoplasmic reticulum, nucleus	69.52	66.36
KRH18264	Soybean	cytosol	69.21	66.16
TraesCS5B01G376300.1	Wheat	mitochondrion	62.22	63.95
TraesCS5D01G384000.3	Wheat	mitochondrion	62.06	63.78
GSMUA_Achr4P22890_001	Banana	cytosol	66.51	63.77
TraesCS5A01G374400.3	Wheat	mitochondrion	61.59	63.3
KXG24018	Sorghum	mitochondrion, plastid	59.37	62.65
GSMUA_Achr7P01240_001	Banana	cytosol	63.97	62.38
Zm00001d013692_P001	Maize	cytosol	59.52	61.58
Zm00001d031081_P001	Maize	endoplasmic reticulum, vacuole	52.86	60.99
HORVU5Hr1G092900.2	Barley	mitochondrion	61.43	60.75
Os12t0617100-01	Rice	mitochondrion	58.25	60.46
Bra014165.1-P	Field mustard	mitochondrion	56.98	54.64
EER91168	Sorghum	plastid	59.68	52.08
Bra008029.1-P	Field mustard	cytosol	13.97	25.0
Bra039699.1-P	Field mustard	cytosol	14.29	23.5
Bra040371.1-P	Field mustard	cytosol	12.86	20.51
Bra041170.1-P	Field mustard	cytosol, mitochondrion	2.22	19.18
Bra029637.1-P	Field mustard	cytosol	13.17	10.92

Protein Annotations

EnsemblPlants:Bra028196.1	EnsemblPlants:Bra028196.1-P	EnsemblPlantsGene:Bra028196	Gene3D:3.40.50.10470	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0044237	InterPro:IF-2B-related	InterPro:NagB/RpiA_transferase-like	KEGG:00270+5.3.1.23	PANTHER:PTHR10233
PANTHER:PTHR10233:SF27	PFAM:PF01008	SEG:seg	SUPFAM:SSF100950	UniParc:UPI00025445C0	UniProt:M4EHD1
MapMan:17.4.1.2.3.4	:	:	:	:	:

Description

AT5G38640 (E=5e-279) | eukaryotic translation initiation factor 2B family protein / eIF-2B family protein

Coordinates

chrA04:-:6560376..6562811

Molecular Weight (calculated)

68518.2 Da

IEP (calculated)

9.970

GRAVY (calculated)

-0.317

Length

630 amino acids

Sequence
(BLAST)

001: MESRRNPRAV VDPKVRQVGF FTSSQPDSTH QPDPIASESH PVASSISPSG NSLSPVMIPP PRHNSSDTFL LRAAAAAASA VSPSSFSYST RRDFPDGSMT
101: ASPGRVSRAS FSKPSSSLPG VGMDSMAAAK SSSVPASGLT TVSVVNMPPG LSEKESDQKK NSKPLKEKTT KAERRALQEA QRAAKAAAKA EGGKAPLVSS
201: GSVASTNVKA AKPAKPSSQK NDVAVAAPGP SEKKGGQTEK DRKKDAPHPR MQYDDESRVV KAKRRAVVKQ TEAKNRVELF RHLPQYEHGT QLPDLETKFF
301: QLDPMHPAVY KVGLQYLSGD ISGGNARCIA MLQAFQEVVK DYSTPSEKTL NRDMTAKISS YVSFLIECRP LSVSMGNAIR FVKNRIAKLP ITLSESEAKA
401: ALQSDIERFI NEKIIMADTV IVKHAVTKIR DGDVLLTYGS PTAVEMVLLH AHELKKKFRV LVVDSRPKLE GQLLLRRLIK RGISCTYTHI NAVSYIMHEV
501: TKVFLGASSV LSNGTVYSRV GTACVAMVAS AFRVPVLVCC EAYKFHERVQ LDSICSNELG DPNAISKVHG REDINYLDGL TNNANLQFLN LMYDATPSDY
601: ISMIITDYGM VPPTSVPVIV REYQKEHSLV

Best Arabidopsis Sequence Match ( AT5G38640.1 )
(BLAST)

001: MESRRNPRAV VDPKVRQVGF FTSSQPDSST QQQQPDPIAA TSASSSSSTI SPSGNSLSPV MIPPPRLNSS DTFPLRVAVA GAAASAVSPS SFSYSSRRDF
101: PDGSTTASPG RHSRGSFVKS SVPVASSLPG IGMDSMAAAK SSSVPASGLT TVSVVTMPPG LSEKASGMEV QSDQKKPLKE KTTKAERRAI QEAQRAAKAA
201: AKADGGKVAP VSSASVASTS VKAAKPAKAT SQKNDVAVAT GAAEKKGGPS EKDRKKDAPH PRMQYDDESR VVKAKRRAVV KQTEAKNRVE LFRHLPQYEH
301: GTQLPDLETK FFQLDPMHPA VYKVGLQYLS GDISGGNARC IAMLQAFQEV VKDYSTPPEK SLNRDMTAKI SSYVSFLIEC RPLSISMGNA IRFVKNRIAK
401: LPITLSESEA KATLQSDIER FINEKIIVAD TVIVKHAVTK IRDGDVLLTY GSPTAVEMVI LHAHELRKKF RVLVVDSRPK LEGQLLLRRL IKRGINCTYT
501: HINAISYIMH EVTKVFLGAS SVLSNGTVYS RVGTACVAMV ANAFRVPVLV CCEAYKFHER VQLDSICSNE LGDPNAISEV HGREDINYLD GLTNNANLQF
601: LNLMYDATPS DYISMIITDY GMVPPTSVPV IVREYQKEHL LV

Arabidopsis Description

At5g38640 [Source:UniProtKB/TrEMBL;Acc:Q9FFV8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.