Factsheet for Zm00001d041758_P001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytoskeleton, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
cytoskeleton 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, cytosol, peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d014297_P006

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53880.1	Zm00001d014297_P006	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU79155	Sorghum	cytosol	96.14	95.36
HORVU5Hr1G038720.1	Barley	cytosol	93.66	93.92
TraesCS5A01G109200.2	Wheat	cytosol	93.66	93.92
TraesCS5D01G121400.1	Wheat	cytosol	93.11	93.37
Os12t0497400-01	Rice	cytosol	94.49	90.26
TraesCS5B01G113900.1	Wheat	cytosol	83.47	87.07
GSMUA_Achr11P...	Banana	cytosol	65.56	85.92
Bra041170.1-P	Field mustard	cytosol, mitochondrion	16.25	80.82
Bra008029.1-P	Field mustard	cytosol	74.38	76.7
KRH47707	Soybean	cytosol	71.63	74.93
KRH69015	Soybean	cytosol	77.41	73.56
CDY03642	Canola	mitochondrion	74.38	72.97
CDX82154	Canola	mitochondrion	74.38	72.19
GSMUA_Achr8P16800_001	Banana	mitochondrion, plastid	76.86	70.81
CDX72907	Canola	cytosol	74.66	70.39
KRG97288	Soybean	extracellular	76.58	70.2
CDX96399	Canola	cytosol	74.38	69.95
PGSC0003DMT400074245	Potato	cytosol	76.58	69.67
AT1G53880.1	Thale cress	cytosol	73.55	69.35
Bra039699.1-P	Field mustard	cytosol	72.18	68.41
CDY36614	Canola	cytosol	72.73	68.39
CDY24066	Canola	cytosol	72.45	68.31
Solyc12g049580.1.1	Tomato	nucleus	75.48	66.99
AT1G72340.2	Thale cress	cytosol, plastid	74.1	65.77
VIT_09s0002g00390.t01	Wine grape	mitochondrion, plastid	76.86	48.19
AT1G53900.2	Thale cress	mitochondrion	73.55	44.21
Zm00001d033223_P003	Maize	cytosol	12.67	19.74
Zm00001d033046_P002	Maize	cytosol	19.56	17.07
Zm00001d014246_P004	Maize	cytosol	19.56	15.92
Zm00001d031081_P001	Maize	endoplasmic reticulum, vacuole	22.04	14.65
Zm00001d013692_P001	Maize	cytosol	24.52	14.61

Protein Annotations

KEGG:00270+5.3.1.23	Gene3D:1.20.120.1070	EntrezGene:100283573	MapMan:17.4.1.2.3.1	Gene3D:3.40.50.10470	UniProt:B6TJL9
ncoils:Coil	EMBL:EU965184	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0044237	InterPro:IF-2B-related	InterPro:NagB/RpiA_transferase-like
ProteinID:ONM33615.1	PFAM:PF01008	PANTHER:PTHR10233	PANTHER:PTHR10233:SF18	SUPFAM:SSF100950	UniParc:UPI000182DC91
EnsemblPlantsGene:Zm00001d041758	EnsemblPlants:Zm00001d041758_P001	EnsemblPlants:Zm00001d041758_T001	SEG:seg	:	:

Description

Translation initiation factor eIF-2B alpha subunit

Coordinates

chr3:-:136138625..136142116

Molecular Weight (calculated)

39426.5 Da

IEP (calculated)

5.259

GRAVY (calculated)

0.054

Length

363 amino acids

Sequence
(BLAST)

001: MEPDAAQNPS PSPVPPPISA YYQTRAEHHA VVTSDWLAHA AAAAAAFPGA DTADAAPPPS PGGGGVIEEF NFWRRKPEAA EAVAAIMALA AVIRSSRATT
101: MMELEIELKK ASDKLKSWDA TSISLSAACD LFMRFVTRTS HLEHEKFDAA KSRLIERGEK FGEISLKARK TIAMLSQDFI YDGCTILVHG YSRVVLEVLK
201: LAASNRKLFR VLCTEGRPDR TGLRMSNELA ALGIPVKVLI DSAVAYSIDE VDMVFVGADG VVESGGIINM MGTYQIALVA HTMDKPVYVA AESYKFARLY
301: PLDQKDMTPA HRPIDFGVPI PIGVEVETSA RDYTPPQYLT LLLTDLGVLT PSVVSDELIQ LYL

Best Arabidopsis Sequence Match ( AT1G53900.2 )
(BLAST)

001: MQIYSNNRTM RTKFSLNLIS PAKNMVKIHP DKAFPVDFSV GEGKTSPYLT TEKESFTIWM RSLVFHSKGC TVFDSKGNLI YRVDNYNSKS CSEVYLMDLY
101: GKILFTLRQK KLGLFKSWKG YNSTGTRFQL RKNFKILPKG SSSSYKVVMG SRIVDGDHQS CYKIVKRKSV FTIEDGSGRL LAEVKKKQSN IKSLDLGKDV
201: LTMMVEPQLE TEIFEEFIKM WRESASFILD KHQNNKPISL THSIDSPPPP SASMADENPN PNPISAYYQT RAAHHGIVTS EWLEQAQAAV RRYPDRDSLV
301: SGRPFSVIED FNSWRQQPDL AEAVAAIRAL AAVIRASEAT TMMELEIELK KASDTLKSWD TTSISLTAGC DLFMRYVTRT SALEFEDFNS AKSRVLERAE
401: KFGEISCKAR TIIAMLSQDF IFDGCTILVH GFSRVVFEIL KTSAQNKKLF RVLCTEGRPD KTGVLLANEL AKLDIPVKLL IDSAVAYSMD EVDMVFVGAD
501: GVVESGGIIN MMGTYQIALV AQSMNKPVYV AAESYKFARL YPLDQKDLEP ALRPIDFSVP VPPKVEVERS ARDYTPPQYL TLLFTDLGVL TPSVVSDELI
601: QLYL

Arabidopsis Description

Eukaryotic translation initiation factor 2B (eIF-2B) family protein [Source:TAIR;Acc:AT1G53900]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.