CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH14106
KRH74010

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53880.1	KRH14106	AT5G35750.1	18642946
AT1G53880.1	KRH74010	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra041170.1-P	Field mustard	cytosol, mitochondrion	17.58	83.56
GSMUA_Achr11P...	Banana	cytosol	66.28	83.03
KRH69015	Soybean	cytosol	86.46	78.53
Bra008029.1-P	Field mustard	cytosol	79.54	78.41
KRG97288	Soybean	extracellular	85.88	75.25
CDY03642	Canola	mitochondrion	79.54	74.59
CDX82154	Canola	mitochondrion	79.25	73.53
CDX96399	Canola	cytosol	80.69	72.54
CDX72907	Canola	cytosol	80.4	72.47
TraesCS5D01G121400.1	Wheat	cytosol	75.5	72.38
TraesCS5A01G109200.2	Wheat	cytosol	75.5	72.38
HORVU5Hr1G038720.1	Barley	cytosol	74.93	71.82
Zm00001d041758_P001	Maize	cytoskeleton, cytosol, peroxisome	74.93	71.63
OQU79155	Sorghum	cytosol	75.5	71.58
Bra039699.1-P	Field mustard	cytosol	78.96	71.54
CDY36614	Canola	cytosol	79.54	71.5
PGSC0003DMT400074245	Potato	cytosol	82.13	71.43
AT1G53880.1	Thale cress	cytosol	79.25	71.43
CDY24066	Canola	cytosol	78.96	71.17
Os12t0497400-01	Rice	cytosol	75.79	69.21
Solyc12g049580.1.1	Tomato	nucleus	80.98	68.7
GSMUA_Achr8P16800_001	Banana	mitochondrion, plastid	77.81	68.53
AT1G72340.2	Thale cress	cytosol, plastid	79.83	67.73
TraesCS5B01G113900.1	Wheat	cytosol	66.57	66.38
VIT_09s0002g00390.t01	Wine grape	mitochondrion, plastid	83.29	49.91
AT1G53900.2	Thale cress	mitochondrion	79.25	45.53
KRH48472	Soybean	endoplasmic reticulum	21.61	18.07
KRH39206	Soybean	cytosol	21.61	18.07
KRH30036	Soybean	cytosol	21.04	17.59
KRH03820	Soybean	cytosol, mitochondrion, nucleus, plasma membrane	25.07	15.73
KRH01494	Soybean	nucleus	24.5	13.36
KRH18264	Soybean	cytosol	24.78	13.05
KRG93828	Soybean	endoplasmic reticulum, nucleus	24.78	13.03
KRH54799	Soybean	plastid	24.78	12.61

Protein Annotations

KEGG:00270+5.3.1.23	Gene3D:1.20.120.1070	EntrezGene:102669842	MapMan:17.4.1.2.3.1	Gene3D:3.40.50.10470	EMBL:ACUP02004161
EnsemblPlantsGene:GLYMA_07G045300	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0044237	UniProt:I1KHI7	InterPro:IF-2B-related	EnsemblPlants:KRH47707
ProteinID:KRH47707	ProteinID:KRH47707.1	InterPro:NagB/RpiA_transferase-like	PFAM:PF01008	PANTHER:PTHR10233	PANTHER:PTHR10233:SF18
MetaCyc:PWY-4361	MetaCyc:PWY-7174	SUPFAM:SSF100950	UniParc:UPI00023C7A04	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:-:3781097..3783621

Molecular Weight (calculated)

38639.4 Da

IEP (calculated)

4.990

GRAVY (calculated)

0.005

Length

347 amino acids

Sequence
(BLAST)

001: MENQKASAYY ENRAVQFGVV STDWLAQAQS ATVHSPPHNN DDDEEIPFSV ISEFDRWRKH PDLAEAVAAI RALAAVIRSS KASTMMQLEI QLKNASDTLK
101: CWDTTSISLT AACDLFMRYV TRTSALEYED FNSAKSRLLE RAEKFGEISF KARKIIAMLS QDFIFDGCTI LVHGFSRVVL QILKLAAQNN KLFRVFCTEG
201: RPDRTGLRLS NELAKLDVPV KLVIDSAVAY TMDEVDMVFV GADGVVESGG IINMMGTYQI SLVAKSMSKP VYVAAESYKF ARLYPLDQKD LAPALRPVDF
301: GVPIPSKVEV ECSARDYTPP QYLTLLFTDL GVLTPSVVSD ELIQLYL

Best Arabidopsis Sequence Match ( AT1G53900.2 )
(BLAST)

001: MQIYSNNRTM RTKFSLNLIS PAKNMVKIHP DKAFPVDFSV GEGKTSPYLT TEKESFTIWM RSLVFHSKGC TVFDSKGNLI YRVDNYNSKS CSEVYLMDLY
101: GKILFTLRQK KLGLFKSWKG YNSTGTRFQL RKNFKILPKG SSSSYKVVMG SRIVDGDHQS CYKIVKRKSV FTIEDGSGRL LAEVKKKQSN IKSLDLGKDV
201: LTMMVEPQLE TEIFEEFIKM WRESASFILD KHQNNKPISL THSIDSPPPP SASMADENPN PNPISAYYQT RAAHHGIVTS EWLEQAQAAV RRYPDRDSLV
301: SGRPFSVIED FNSWRQQPDL AEAVAAIRAL AAVIRASEAT TMMELEIELK KASDTLKSWD TTSISLTAGC DLFMRYVTRT SALEFEDFNS AKSRVLERAE
401: KFGEISCKAR TIIAMLSQDF IFDGCTILVH GFSRVVFEIL KTSAQNKKLF RVLCTEGRPD KTGVLLANEL AKLDIPVKLL IDSAVAYSMD EVDMVFVGAD
501: GVVESGGIIN MMGTYQIALV AQSMNKPVYV AAESYKFARL YPLDQKDLEP ALRPIDFSVP VPPKVEVERS ARDYTPPQYL TLLFTDLGVL TPSVVSDELI
601: QLYL

Arabidopsis Description

Eukaryotic translation initiation factor 2B (eIF-2B) family protein [Source:TAIR;Acc:AT1G53900]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.