Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033264.1-P | Field mustard | nucleus | 77.02 | 73.84 |
| CDX90032 | Canola | nucleus | 67.33 | 66.96 |
| CDX79176 | Canola | cytosol | 10.23 | 50.44 |
| AT1G01440.1 | Thale cress | nucleus | 55.12 | 46.23 |
| CDY48504 | Canola | nucleus | 44.88 | 44.41 |
| CDY67475 | Canola | nucleus | 46.86 | 44.16 |
| CDX91876 | Canola | nucleus | 45.96 | 43.84 |
| CDY07174 | Canola | nucleus | 45.42 | 39.78 |
| CDX80013 | Canola | nucleus | 30.52 | 25.56 |
| CDY42041 | Canola | cytosol | 29.62 | 25.54 |
| CDX71720 | Canola | cytosol | 32.5 | 24.46 |
| CDY11374 | Canola | cytosol | 31.96 | 24.02 |
| CDY11373 | Canola | cytosol | 30.7 | 23.33 |
| GSMUA_Achr10P... | Banana | nucleus | 31.06 | 23.04 |
| GSMUA_Achr7P14150_001 | Banana | nucleus | 29.44 | 21.64 |
| GSMUA_Achr3P25070_001 | Banana | vacuole | 26.75 | 21.53 |
| GSMUA_Achr10P... | Banana | cytosol | 29.62 | 21.26 |
| GSMUA_Achr10P... | Banana | nucleus | 29.44 | 20.92 |
| Zm00001d053382_P002 | Maize | nucleus | 30.34 | 20.48 |
| Os05t0586400-01 | Rice | nucleus | 28.37 | 20.26 |
| TraesCS1B01G459600.2 | Wheat | plastid | 28.55 | 20.23 |
| Os02t0258300-01 | Rice | nucleus | 30.16 | 19.95 |
| Os01t0621300-01 | Rice | nucleus | 28.55 | 19.7 |
| TraesCS1D01G434200.2 | Wheat | nucleus | 27.47 | 19.57 |
| Zm00001d016081_P002 | Maize | nucleus | 29.8 | 19.48 |
| TraesCS3B01G253700.2 | Wheat | nucleus | 27.83 | 19.47 |
| TraesCS3D01G229400.1 | Wheat | nucleus | 27.83 | 19.45 |
| KXG29961 | Sorghum | nucleus | 30.16 | 19.44 |
| HORVU3Hr1G055550.3 | Barley | nucleus | 27.47 | 19.29 |
| TraesCS1A01G425200.2 | Wheat | nucleus | 27.11 | 19.19 |
| TraesCS7B01G276600.1 | Wheat | nucleus | 28.37 | 19.08 |
| KXG22639 | Sorghum | nucleus | 27.11 | 19.07 |
| TraesCS7D01G371500.1 | Wheat | nucleus | 28.19 | 18.98 |
| EER88427 | Sorghum | nucleus | 27.11 | 18.97 |
| Zm00001d046072_P001 | Maize | cytosol | 27.47 | 18.96 |
| TraesCS7A01G351500.1 | Wheat | nucleus | 28.01 | 18.95 |
| EES03295 | Sorghum | nucleus | 27.11 | 18.92 |
| Zm00001d044191_P004 | Maize | nucleus | 26.93 | 18.89 |
| Os06t0524300-01 | Rice | nucleus | 27.47 | 18.87 |
| TraesCS7B01G247600.1 | Wheat | cytosol | 28.01 | 18.55 |
| TraesCS7A01G336000.1 | Wheat | nucleus | 28.37 | 18.52 |
| TraesCS7D01G343700.1 | Wheat | cytosol | 28.19 | 18.49 |
| HORVU0Hr1G021800.1 | Barley | nucleus | 26.75 | 18.28 |
| Zm00001d011373_P002 | Maize | nucleus | 26.57 | 18.25 |
| HORVU1Hr1G092980.14 | Barley | plastid | 27.83 | 17.67 |
| TraesCS3A01G224200.2 | Wheat | nucleus | 26.39 | 17.63 |
| Zm00001d009716_P001 | Maize | nucleus | 23.7 | 17.28 |
| HORVU7Hr1G082720.10 | Barley | cytosol, nucleus | 26.39 | 17.21 |
Protein Annotations
| EnsemblPlants:CDY15177 | EnsemblPlantsGene:GSBRNA2T00085359001 | InterPro:Zinc_ribbon_12 | PANTHER:PTHR31105 | PANTHER:PTHR31105:SF3 | PFAM:PF11331 |
| ProteinID:CDY15177 | ProteinID:CDY15177.1 | SEG:seg | UniParc:UPI0004EF037A | UniProt:A0A078FQP4 | MapMan:35.2 |
Description
BnaC05g00560DBnaC05g00560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FQP4]
Coordinates
chrLK032052:+:317134..319406
Molecular Weight (calculated)
62100.1 Da
IEP (calculated)
6.982
GRAVY (calculated)
-0.815
Length
557 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTSGSASSR SQEETRFKEE DDASPRRNRQ DQNTIPIQYA DQQQAELFRK LDSLKGHVLR GQDSPRASHH QPPPYYNPYP PYGMYPSPSN PPHGFPMHQS
101: LYGHYPNQML PRPPYPPQGH YVDIGPDILD PHLHDPRFLP GTPSRFADVP VSHHGGGAQG HHHTRWPSDI NSEMVNSETG GGAFARGYAQ TAADSRRCHP
201: LAGGAPFVAC HNCFELLYLP RKKLLLSQAK QQQKLQCGAC SEVFSFTIVD NKLVFSSSSS ALQETNRARV EVEDRNAVVD DCPLKDEEHS DDEGGRSSVS
301: SEPQKEVVKS VRRRAKAAKA PPPENSNLLE LFEYSNVNRA ALTYGMAQLG YNKQVSFTKQ ESLASETDIS YNGYYNNTED DSRISNASKE ESGRRNRNNK
401: TVANNDQYDR QLEVWVNGHL IPEDQVISAE KQAGPVQAGN YWYDYRAGFW GVMGHPCLGI IPPFIEEFSR PMADNCGAGN TGVFVNGREL HERDFELLAS
501: RGLPRGKNRS YIVDISGRVL DGDSGEELKS LGKLAPTIEK VKHGFGMRVP RYLASST
101: LYGHYPNQML PRPPYPPQGH YVDIGPDILD PHLHDPRFLP GTPSRFADVP VSHHGGGAQG HHHTRWPSDI NSEMVNSETG GGAFARGYAQ TAADSRRCHP
201: LAGGAPFVAC HNCFELLYLP RKKLLLSQAK QQQKLQCGAC SEVFSFTIVD NKLVFSSSSS ALQETNRARV EVEDRNAVVD DCPLKDEEHS DDEGGRSSVS
301: SEPQKEVVKS VRRRAKAAKA PPPENSNLLE LFEYSNVNRA ALTYGMAQLG YNKQVSFTKQ ESLASETDIS YNGYYNNTED DSRISNASKE ESGRRNRNNK
401: TVANNDQYDR QLEVWVNGHL IPEDQVISAE KQAGPVQAGN YWYDYRAGFW GVMGHPCLGI IPPFIEEFSR PMADNCGAGN TGVFVNGREL HERDFELLAS
501: RGLPRGKNRS YIVDISGRVL DGDSGEELKS LGKLAPTIEK VKHGFGMRVP RYLASST
001: MRTSGDVYGA DTGSSRSDED RGFKEDLNES ATSPMRNRLD DSNSRPGSQR FVKSSRKEEE TDSDSSSSKN TTTRNNPIQY TDKQQAELLR KLDSIKDHLL
101: RGGGNNATVV DQPPMGFHAH HGPPPSYYNP YPEPFPYGMY PTASNQPHVP AYRDPYGFPV HRIPQNFYQG PSHYPNQMPP RPPYPQGQYV DIGSDILESQ
201: LQDPRFFPGT PSRYGDVPFS PALHHGEKVG PFSPHGGVHT RWPSEIDSEM GGAFARGYVQ QAVSDTDSRR CHPLAGGAPF IACHSCFELL YVPKKKLLGQ
301: ERQQKMQCGA CSEVITFRVV DKKLVFSSSA LGETTNRVSV EVEDRSSPIP VVDDYPLNDE EPRIHQETKI VHAVSPSDHS NDEDRSSISS EPRKQVVKSV
401: RSRAQGAKVP PPPPPEKSNL LELFEYSNVN RAAITYGMAQ LGYYKQESYT KQDSLKSESV ATETDVSYNE YYTNTEESED SRISKASKEG RRPRNRKQSS
501: EHSFAEVTNN ISSNDQNNEQ LEVWVNGYLI PEDLVISAEK QAGPVQAGKY WYDYRAGFWG VMGNPCLGII PPFIEEFSRP MPDNCGAGNT SVFVNGRELH
601: ERDLELLSSR GLPRGKNRSY IIDIAGRVLD GDSGEELKSL GRLAPTVDKV KHGFGMRVPR SLVS
101: RGGGNNATVV DQPPMGFHAH HGPPPSYYNP YPEPFPYGMY PTASNQPHVP AYRDPYGFPV HRIPQNFYQG PSHYPNQMPP RPPYPQGQYV DIGSDILESQ
201: LQDPRFFPGT PSRYGDVPFS PALHHGEKVG PFSPHGGVHT RWPSEIDSEM GGAFARGYVQ QAVSDTDSRR CHPLAGGAPF IACHSCFELL YVPKKKLLGQ
301: ERQQKMQCGA CSEVITFRVV DKKLVFSSSA LGETTNRVSV EVEDRSSPIP VVDDYPLNDE EPRIHQETKI VHAVSPSDHS NDEDRSSISS EPRKQVVKSV
401: RSRAQGAKVP PPPPPEKSNL LELFEYSNVN RAAITYGMAQ LGYYKQESYT KQDSLKSESV ATETDVSYNE YYTNTEESED SRISKASKEG RRPRNRKQSS
501: EHSFAEVTNN ISSNDQNNEQ LEVWVNGYLI PEDLVISAEK QAGPVQAGKY WYDYRAGFWG VMGNPCLGII PPFIEEFSRP MPDNCGAGNT SVFVNGRELH
601: ERDLELLSSR GLPRGKNRSY IIDIAGRVLD GDSGEELKSL GRLAPTVDKV KHGFGMRVPR SLVS
Arabidopsis Description
At1g01440 [Source:UniProtKB/TrEMBL;Acc:Q6NQ63]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.