CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70521
CDX72151
CDX77841
CDX78539
CDX79176
CDX91876
CDY07161
CDY07174
CDY27228
CDY30932
CDY48492
CDY48504
CDY67475
CDY67732
CDY70634

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G76760.1	CDX77841	AT3G44720.1	21798944
AT1G76760.1	CDY30932	AT3G44720.1	21798944
AT1G76760.1	CDX72151	AT3G56270.1	21798944
AT1G76760.1	CDY27228	AT3G56270.1	21798944
AT1G76760.1	CDY07161	AT4G00980.1	21798944
AT1G76760.1	CDY48492	AT4G00980.1	21798944
AT1G76760.1	CDX79176	AT4G01090.1	21798944
AT1G76760.1	CDX91876	AT4G01090.1	21798944
AT1G76760.1	CDY07174	AT4G01090.1	21798944
AT1G76760.1	CDY48504	AT4G01090.1	21798944
AT1G76760.1	CDY67475	AT4G01090.1	21798944
AT1G76760.1	CDX70521	AT5G13810.1	21798944
AT1G76760.1	CDX78539	AT5G13810.1	21798944
AT1G76760.1	CDY67732	AT5G13810.1	21798944
AT1G76760.1	CDY70634	AT5G13810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87569	Canola	plastid	93.6	93.6
AT1G76760.1	Thale cress	plastid	84.88	84.88
CDY14949	Canola	cytosol	50.0	74.78
HORVU7Hr1G010470.2	Barley	cytosol	30.81	71.62
Os01t0963400-01	Rice	cytosol	48.26	68.03
HORVU2Hr1G087710.1	Barley	cytosol	31.98	67.07
PGSC0003DMT400061915	Potato	cytosol, plastid	60.47	61.18
VIT_18s0072g00400.t01	Wine grape	plastid	61.63	60.57
KRG91663	Soybean	plastid	61.63	60.57
Solyc04g071560.2.1	Tomato	plastid	59.88	59.2
KRH35133	Soybean	plastid	58.72	57.71
GSMUA_Achr6P25720_001	Banana	plastid	55.23	55.88
GSMUA_Achr1P13230_001	Banana	extracellular	43.02	54.81
Zm00001d042017_P002	Maize	plastid	50.0	51.5
EES02107	Sorghum	plastid	50.58	50.88
TraesCS3B01G577800.1	Wheat	plastid	48.26	50.61
TraesCS3A01G509000.1	Wheat	plastid	48.26	50.3
TraesCS3D01G516800.1	Wheat	plastid	47.67	49.7
HORVU5Hr1G116290.1	Barley	plastid	37.79	46.76
HORVU3Hr1G111930.2	Barley	plastid	50.0	41.55
CDY30839	Canola	endoplasmic reticulum, extracellular, plasma membrane	25.0	27.22
CDX98554	Canola	plastid	29.07	26.04
CDX97662	Canola	plastid	29.07	26.04
CDX68513	Canola	plastid	25.0	25.15
CDY36637	Canola	plastid	25.0	25.15
CDY21971	Canola	plastid	26.74	25.14
CDY61995	Canola	plastid	26.16	25.0
CDY48214	Canola	plastid	26.16	25.0
CDY22789	Canola	plastid	26.16	24.73
CDY42508	Canola	plastid	25.58	24.44
CDY37416	Canola	plastid	25.0	23.76
CDY48565	Canola	plastid	25.58	23.66
CDX75826	Canola	endoplasmic reticulum	16.86	22.83
CDX82437	Canola	endoplasmic reticulum	16.28	22.22
CDY65035	Canola	cytosol	15.7	20.45
CDY24127	Canola	cytosol	14.53	19.68
CDY62030	Canola	endoplasmic reticulum, extracellular, vacuole	13.95	17.52
CDY32507	Canola	plastid	23.84	12.24

Protein Annotations

MapMan:10.5.8	Gene3D:3.40.30.10	GO:A0A078DIH1	EnsemblPlants:CDX88314	ProteinID:CDX88314	ProteinID:CDX88314.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006662	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0045454	EnsemblPlantsGene:GSBRNA2T00147820001
InterPro:IPR013766	PFAM:PF00085	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438
PANTHER:PTHR10438:SF280	SUPFAM:SSF52833	TIGRFAMs:TIGR01068	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS
InterPro:Thioredoxin_domain	UniParc:UPI0004EE7FA8	SEG:seg	:	:	:

Description

BnaC06g37580D

Coordinates

chrLK031855:-:305620..306859

Molecular Weight (calculated)

19102.9 Da

IEP (calculated)

8.820

GRAVY (calculated)

-0.203

Length

172 amino acids

Sequence
(BLAST)

001: MAATSLSPST IPSLNRKDSS TVSAFTPRSI SAVKFQFPLR RIRTGDLNLS SLSSSTRSTP RAIEAKKQTY DSFDDLLVNS DKPVLVDFYA TWCGPCQFMV
101: PILSEVSATL KDKIQVVKID TEKYPSIANK YKIEALPTFI LFKDGEPCDR FEGALAAKQL VQRIEDSLEV KT

Best Arabidopsis Sequence Match ( AT1G76760.1 )
(BLAST)

001: MASISLSSST VPSLNSKESS GVSAFASRSI SAVKFQFPVR RVRTGDLKFP SLSSTTRCTP RRIEAKKQTF DSFEDLLVNS DKPVLVDYYA TWCGPCQFMV
101: PILNEVSETL KDKIQVVKID TEKYPSIANK YKIEALPTFI LFKDGEPCDR FEGALTAKQL IQRIEDSLKV KP

Arabidopsis Description

ATY1TY1 [Source:UniProtKB/TrEMBL;Acc:A0A178WE50]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.