Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30839 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 44.7 | 37.34 |
| CDY24127 | Canola | cytosol | 35.61 | 37.01 |
| AT4G12170.1 | Thale cress | extracellular | 32.58 | 28.1 |
| CDY62030 | Canola | endoplasmic reticulum, extracellular, vacuole | 28.03 | 27.01 |
| CDX97662 | Canola | plastid | 27.27 | 18.75 |
| CDX98554 | Canola | plastid | 27.27 | 18.75 |
| CDY14949 | Canola | cytosol | 15.15 | 17.39 |
| CDX68513 | Canola | plastid | 21.97 | 16.96 |
| CDY36637 | Canola | plastid | 21.97 | 16.96 |
| CDX82437 | Canola | endoplasmic reticulum | 15.91 | 16.67 |
| CDY21971 | Canola | plastid | 22.73 | 16.39 |
| CDY48214 | Canola | plastid | 21.97 | 16.11 |
| CDY61995 | Canola | plastid | 21.97 | 16.11 |
| CDX88314 | Canola | plastid | 20.45 | 15.7 |
| CDX87569 | Canola | plastid | 20.45 | 15.7 |
| CDY48565 | Canola | plastid | 21.97 | 15.59 |
| CDY37416 | Canola | plastid | 21.21 | 15.47 |
| CDX75826 | Canola | endoplasmic reticulum | 12.88 | 13.39 |
| CDY22789 | Canola | plastid | 18.18 | 13.19 |
| CDY42508 | Canola | plastid | 17.42 | 12.78 |
| CDY32507 | Canola | plastid | 21.97 | 8.66 |
Protein Annotations
| Gene3D:3.40.30.10 | Gene3D:3.75.10.10 | MapMan:35.2 | GO:A0A078JEZ3 | UniProt:A0A078JEZ3 | EnsemblPlants:CDY65035 |
| ProteinID:CDY65035 | ProteinID:CDY65035.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0006662 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0015035 | GO:GO:0019725 |
| GO:GO:0045454 | GO:GO:0055114 | EnsemblPlantsGene:GSBRNA2T00044062001 | InterPro:IPR013766 | PFAM:PF00085 | PANTHER:PTHR10438 |
| PANTHER:PTHR10438:SF306 | SUPFAM:SSF52833 | SUPFAM:SSF55909 | InterPro:Thioredoxin | InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_domain |
| UniParc:UPI0004EDD735 | : | : | : | : | : |
Description
BnaC03g78080DBnaC03g78080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JEZ3]
Coordinates
chrLK034635:+:2221..2619
Molecular Weight (calculated)
15170.1 Da
IEP (calculated)
4.470
GRAVY (calculated)
-0.082
Length
132 amino acids
Sequence
(BLAST)
(BLAST)
001: MTVNDWTAFC GSDTAATELS VIDSIFKLGE ISNIYKIWDS LVTESEVPVM VMFTQDGWPP CRYVRHVMDE LDSKYTGRFK FYTLNVHEET GIAIRYDIFN
101: VPTTIVFKGG DEMARVYGSN AMEVRRLVEQ YV
101: VPTTIVFKGG DEMARVYGSN AMEVRRLVEQ YV
001: MEKLRVLYRL ILTITCLVCY GFNVGKCSEF DFLIETYVSS SSVPSCRVKC NYDASHHEGD VVSGLGWLIR NSQGTVLECG MGKFQGRMTP EEAECSALIW
101: AIQATSAFGY TKVIFEGDNS NVNRLINTKS DNPRLKHYLD TIKSWIPSFT STEFIFTHRE QNQCADTLVK KAIKSSTQWS LFNCCPHFLY PIVLSILGQP
201: HLNFADWSGL IAWLPLLLRI TELNSQTPHV MVMFTARWCG PCRDMIPILN KMDSEYKNEF KFYTVNFDTE IRFTERFDIS YLPTTLVFKG GEQMAKVTGA
301: DPKKLRELVK KYI
101: AIQATSAFGY TKVIFEGDNS NVNRLINTKS DNPRLKHYLD TIKSWIPSFT STEFIFTHRE QNQCADTLVK KAIKSSTQWS LFNCCPHFLY PIVLSILGQP
201: HLNFADWSGL IAWLPLLLRI TELNSQTPHV MVMFTARWCG PCRDMIPILN KMDSEYKNEF KFYTVNFDTE IRFTERFDIS YLPTTLVFKG GEQMAKVTGA
301: DPKKLRELVK KYI
Arabidopsis Description
Thioredoxin family protein [Source:UniProtKB/TrEMBL;Acc:F4HPP4]
SUBAcon: [endoplasmic reticulum,plasma membrane]
SUBAcon: [endoplasmic reticulum,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.