Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY62030 | Canola | endoplasmic reticulum, extracellular, vacuole | 41.77 | 48.18 |
| CDY24127 | Canola | cytosol | 38.61 | 48.03 |
| CDY65035 | Canola | cytosol | 37.34 | 44.7 |
| CDY14949 | Canola | cytosol | 22.78 | 31.3 |
| CDX97662 | Canola | plastid | 33.54 | 27.6 |
| CDX98554 | Canola | plastid | 33.54 | 27.6 |
| CDX82437 | Canola | endoplasmic reticulum | 20.89 | 26.19 |
| CDY42508 | Canola | plastid | 29.11 | 25.56 |
| CDY22789 | Canola | plastid | 29.11 | 25.27 |
| CDX88314 | Canola | plastid | 27.22 | 25.0 |
| CDX87569 | Canola | plastid | 27.22 | 25.0 |
| CDY48214 | Canola | plastid | 27.85 | 24.44 |
| CDX75826 | Canola | endoplasmic reticulum | 19.62 | 24.41 |
| CDY61995 | Canola | plastid | 27.22 | 23.89 |
| CDX68513 | Canola | plastid | 25.32 | 23.39 |
| CDY36637 | Canola | plastid | 25.32 | 23.39 |
| CDY48565 | Canola | plastid | 27.22 | 23.12 |
| CDY21971 | Canola | plastid | 26.58 | 22.95 |
| CDY37416 | Canola | plastid | 24.68 | 21.55 |
| CDY32507 | Canola | plastid | 23.42 | 11.04 |
Protein Annotations
| MapMan:10.5.5 | Gene3D:3.40.30.10 | GO:A0A078H071 | UniProt:A0A078H071 | EnsemblPlants:CDY30839 | ProteinID:CDY30839 |
| ProteinID:CDY30839.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0006662 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0015035 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0019725 | GO:GO:0045454 | GO:GO:0055114 | EnsemblPlantsGene:GSBRNA2T00046306001 | InterPro:IPR013766 | PFAM:PF00085 |
| PIRSF:PIRSF000077 | PRINTS:PR00421 | ScanProsite:PS00194 | PFscan:PS51352 | PANTHER:PTHR10438 | PANTHER:PTHR10438:SF360 |
| SUPFAM:SSF52833 | TMHMM:TMhelix | InterPro:Thioredoxin | InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_CS | InterPro:Thioredoxin_domain |
| UniParc:UPI0004EDC8C7 | : | : | : | : | : |
Description
BnaC04g26940DBnaC04g26940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H071]
Coordinates
chrLK032262:-:29734..30289
Molecular Weight (calculated)
17752.4 Da
IEP (calculated)
4.518
GRAVY (calculated)
0.120
Length
158 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQIGVLYRL VATITCFVCL GFNVAMCSES RSLIKTYVSS SLPSNDDLVH PAKLKVIEIS ESEWDSRVVQ SELPVMVLFT ADWCGPCRIM SPILDKLDSD
101: YTDRFTFYTL DTDKNTAIAE RYSIRAMPTT IVFKGGDEVA RVTGAIPSKL YELVEQYV
101: YTDRFTFYTL DTDKNTAIAE RYSIRAMPTT IVFKGGDEVA RVTGAIPSKL YELVEQYV
001: MEQIRGLYHL VVTVTCLVCL GFNVSMCSGS DSDPFIKAYV SSSLPSHDGL VQSLSASEWN SLVIQSKVPV IVVFIAKDCA ECGSLMPELE FLDSEYEYML
101: KFYTVDTDEE LELAKDYRIE YHPITIVFKG GEEKERVLGY YPQMLGQLAN KYL
101: KFYTVDTDEE LELAKDYRIE YHPITIVFKG GEEKERVLGY YPQMLGQLAN KYL
Arabidopsis Description
Thioredoxin superfamily protein [Source:TAIR;Acc:AT4G12170]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.