CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX91687
CDY04798
CDY12520
CDY21378
CDY25747

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G03520.1	CDX91687	AT1G22640.1	21798944
AT4G03520.1	CDY04798	AT1G22640.1	21798944
AT4G03520.1	CDY12520	AT1G22640.1	21798944
AT4G03520.1	CDY21378	AT1G22640.1	21798944
AT4G03520.1	CDY25747	AT1G22640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034214.1-P	Field mustard	plastid	98.39	99.46
CDY21971	Canola	plastid	95.16	96.72
CDY61995	Canola	plastid	83.33	86.11
CDY48214	Canola	plastid	82.8	85.56
AT4G03520.1	Thale cress	plastid	80.11	80.11
CDY37416	Canola	plastid	69.89	71.82
VIT_12s0028g03850.t01	Wine grape	cytosol	40.32	54.74
PGSC0003DMT400055831	Potato	mitochondrion, plastid	47.31	48.09
Solyc10g008390.2.1	Tomato	plastid	46.24	46.99
CDX98554	Canola	plastid	42.47	41.15
CDX97662	Canola	plastid	42.47	41.15
HORVU7Hr1G119730.1	Barley	endoplasmic reticulum	25.81	38.1
CDY32507	Canola	plastid	64.52	35.82
CDX82437	Canola	endoplasmic reticulum	23.66	34.92
KXG20981	Sorghum	plastid	32.26	34.29
CDX75826	Canola	endoplasmic reticulum	23.12	33.86
CDY14949	Canola	cytosol	20.43	33.04
CDY36637	Canola	plastid	27.42	29.82
CDX68513	Canola	plastid	27.42	29.82
TraesCS7D01G547400.1	Wheat	plastid	27.42	29.65
TraesCS7A01G563600.1	Wheat	plastid	27.42	28.49
CDY30839	Canola	endoplasmic reticulum, extracellular, plasma membrane	23.12	27.22
CDY24127	Canola	cytosol	18.28	26.77
CDX88314	Canola	plastid	23.66	25.58
CDX87569	Canola	plastid	23.12	25.0
CDY42508	Canola	plastid	23.12	23.89
CDY22789	Canola	plastid	23.12	23.63
CDY65035	Canola	cytosol	15.59	21.97
CDY62030	Canola	endoplasmic reticulum, extracellular, vacuole	13.98	18.98

Protein Annotations

MapMan:10.5.5	Gene3D:3.40.30.10	GO:A0A078ICG7	UniProt:A0A078ICG7	EnsemblPlants:CDY48565	ProteinID:CDY48565
ProteinID:CDY48565.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006662
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0045454
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00091301001	InterPro:IPR013766	PFAM:PF00085	PRINTS:PR00421	ScanProsite:PS00194
PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF300	SUPFAM:SSF52833	TIGRFAMs:TIGR01068	InterPro:Thioredoxin
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI0004EECCD9	SEG:seg	:

Description

BnaA09g01610DBnaA09g01610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ICG7]

Coordinates

chrLK032779:-:84361..86234

Molecular Weight (calculated)

20080.1 Da

IEP (calculated)

8.636

GRAVY (calculated)

-0.053

Length

186 amino acids

Sequence
(BLAST)

001: MAAAFTCTSL PPLSLRSETK AAASSSLSAR RLFAVSPESG GLRIRLSQSP SSLTSIQPRV PRLRRGGGVV VCEAQETTTD LVSIVNDSTW DSLVLKADGP
101: VLVDFWAPWC GPCKMIDPLV NELAQQYTGK VKFYKLNTDD SPSTPSQYNV RSIPTIMIFV DGEKKDAIIG AVPKSTLTSS IDKFLQ

Best Arabidopsis Sequence Match ( AT4G03520.1 )
(BLAST)

001: MAAFTCTSRP PISLRSETRI VSSSPSASSL SSRRMFAVLP ESSGLRIRLS LSPASLTSIH QPRVSRLRRA VVCEAQETTT DIQVVNDSTW DSLVLKATGP
101: VVVDFWAPWC GPCKMIDPLV NDLAQHYTGK IKFYKLNTDE SPNTPGQYGV RSIPTIMIFV GGEKKDTIIG AVPKTTLTSS LDKFLP

Arabidopsis Description

ATHM2Thioredoxin M2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SEU8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.