Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G010470.2 | Barley | cytosol | 41.74 | 64.86 |
| Os01t0963400-01 | Rice | cytosol | 68.7 | 64.75 |
| AT1G43560.1 | Thale cress | plastid | 90.43 | 62.28 |
| HORVU2Hr1G087710.1 | Barley | cytosol | 43.48 | 60.98 |
| CDX87569 | Canola | plastid | 75.65 | 50.58 |
| CDX88314 | Canola | plastid | 74.78 | 50.0 |
| PGSC0003DMT400061915 | Potato | cytosol, plastid | 73.04 | 49.41 |
| KRG91663 | Soybean | plastid | 74.78 | 49.14 |
| GSMUA_Achr1P13230_001 | Banana | extracellular | 56.52 | 48.15 |
| KRH35133 | Soybean | plastid | 73.04 | 48.0 |
| VIT_18s0072g00400.t01 | Wine grape | plastid | 73.04 | 48.0 |
| Solyc04g071560.2.1 | Tomato | plastid | 71.3 | 47.13 |
| EES02107 | Sorghum | plastid | 68.7 | 46.2 |
| Zm00001d042017_P002 | Maize | plastid | 66.96 | 46.11 |
| TraesCS3B01G577800.1 | Wheat | plastid | 65.22 | 45.73 |
| TraesCS3A01G509000.1 | Wheat | plastid | 65.22 | 45.45 |
| TraesCS3D01G516800.1 | Wheat | plastid | 64.35 | 44.85 |
| GSMUA_Achr6P25720_001 | Banana | plastid | 66.09 | 44.71 |
| HORVU5Hr1G116290.1 | Barley | plastid | 50.43 | 41.73 |
| HORVU3Hr1G111930.2 | Barley | plastid | 66.09 | 36.72 |
| CDY42508 | Canola | plastid | 38.26 | 24.44 |
| CDY22789 | Canola | plastid | 38.26 | 24.18 |
| CDY30839 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 31.3 | 22.78 |
| CDY21971 | Canola | plastid | 33.91 | 21.31 |
| CDY61995 | Canola | plastid | 33.04 | 21.11 |
| CDY48214 | Canola | plastid | 33.04 | 21.11 |
| CDY37416 | Canola | plastid | 32.17 | 20.44 |
| CDY48565 | Canola | plastid | 33.04 | 20.43 |
| CDX97662 | Canola | plastid | 32.17 | 19.27 |
| CDX98554 | Canola | plastid | 32.17 | 19.27 |
| CDY24127 | Canola | cytosol | 20.87 | 18.9 |
| CDX68513 | Canola | plastid | 26.96 | 18.13 |
| CDY36637 | Canola | plastid | 26.96 | 18.13 |
| CDY62030 | Canola | endoplasmic reticulum, extracellular, vacuole | 19.13 | 16.06 |
| CDX82437 | Canola | endoplasmic reticulum | 17.39 | 15.87 |
| CDX75826 | Canola | endoplasmic reticulum | 17.39 | 15.75 |
| CDY65035 | Canola | cytosol | 17.39 | 15.15 |
| CDY32507 | Canola | plastid | 29.57 | 10.15 |
Protein Annotations
| MapMan:10.5.8 | Gene3D:3.40.30.10 | GO:A0A078FPY5 | UniProt:A0A078FPY5 | EnsemblPlants:CDY14949 | ProteinID:CDY14949 |
| ProteinID:CDY14949.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006662 | GO:GO:0008047 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009416 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009628 | GO:GO:0009987 |
| GO:GO:0015035 | GO:GO:0016671 | GO:GO:0019725 | GO:GO:0030234 | GO:GO:0043085 | GO:GO:0045454 |
| GO:GO:0055114 | EnsemblPlantsGene:GSBRNA2T00084909001 | InterPro:IPR013766 | PFAM:PF00085 | PIRSF:PIRSF000077 | PRINTS:PR00421 |
| ScanProsite:PS00194 | PFscan:PS51352 | PANTHER:PTHR10438 | PANTHER:PTHR10438:SF280 | SUPFAM:SSF52833 | TIGRFAMs:TIGR01068 |
| InterPro:Thioredoxin | InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_CS | InterPro:Thioredoxin_domain | UniParc:UPI0004EF2197 | : |
Description
BnaA10g09070DThioredoxin [Source:UniProtKB/TrEMBL;Acc:A0A078FPY5]
Coordinates
chrLK032049:-:95039..95879
Molecular Weight (calculated)
13214.0 Da
IEP (calculated)
5.161
GRAVY (calculated)
-0.169
Length
115 amino acids
Sequence
(BLAST)
(BLAST)
001: MISMQVRAKK QTFNSFDDLL LNSDKPLLVD FYATWCGPCQ LMVPILNEVS ETLRDKIAVV KIDTEKYPSL ANKYQVEALP TFILFKDGKL WDRFEGALQA
101: NQLVERIETS LQAKQ
101: NQLVERIETS LQAKQ
001: MAISLATAYI SPCFTPESSN SASPSRTLSS VRLPSQIRRF GSVQSPSSST RFAPLTVRAA KKQTFNSFDD LLQNSDKPVL VDFYATWCGP CQLMVPILNE
101: VSETLKDIIA VVKIDTEKYP SLANKYQIEA LPTFILFKDG KLWDRFEGAL PANQLVERIE NSLQVKQ
101: VSETLKDIIA VVKIDTEKYP SLANKYQIEA LPTFILFKDG KLWDRFEGAL PANQLVERIE NSLQVKQ
Arabidopsis Description
Aty2Ty2 [Source:UniProtKB/TrEMBL;Acc:A0A178WFY2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.