CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, peroxisome
Any Predictor:	cytosol, endoplasmic reticulum, peroxisome
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04410.1	CDY32970	AT5G42980.1	15352244
AT1G04410.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030569.1-P	Field mustard	cytosol, golgi, peroxisome	99.1	99.1
CDY67454	Canola	cytosol, endoplasmic reticulum, peroxisome	98.8	98.8
AT1G04410.1	Thale cress	peroxisome	96.99	96.99
CDX89826	Canola	peroxisome	96.99	96.99
CDY43609	Canola	peroxisome	96.99	96.99
CDX98109	Canola	cytosol, endoplasmic reticulum, peroxisome	63.86	96.8
CDY18230	Canola	peroxisome	96.69	96.69
CDY32953	Canola	peroxisome	96.69	96.69
Solyc09g090140.2.1	Tomato	plastid	92.47	92.47
PGSC0003DMT400044217	Potato	cytosol	92.17	92.17
Zm00001d032695_P001	Maize	plasma membrane	91.57	91.57
EER94077	Sorghum	peroxisome	91.57	91.57
TraesCS1D01G153900.1	Wheat	golgi, plastid	90.36	90.09
Zm00001d014030_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	84.64	90.06
VIT_07s0005g03360.t01	Wine grape	extracellular	90.06	90.06
KRH31702	Soybean	endoplasmic reticulum	88.86	89.94
HORVU1Hr1G041250.5	Barley	extracellular	90.06	89.79
GSMUA_Achr4P21920_001	Banana	cytosol, endoplasmic reticulum, peroxisome	89.76	89.76
KRH69119	Soybean	mitochondrion, nucleus	89.76	89.76
TraesCS1B01G172400.1	Wheat	golgi	89.76	89.49
GSMUA_Achr5P03900_001	Banana	plasma membrane	89.46	89.46
Os10t0478200-01	Rice	extracellular	89.16	89.16
TraesCS1A01G155200.1	Wheat	endoplasmic reticulum	87.35	88.41
VIT_07s0005g03350.t01	Wine grape	plastid	90.06	81.92
CDY32764	Canola	endoplasmic reticulum	71.08	63.27
CDY32878	Canola	endoplasmic reticulum, golgi, plasma membrane	70.78	63.0
CDY32993	Canola	plastid	40.96	30.77
CDY43863	Canola	plastid	40.96	30.7
CDY58562	Canola	plastid	40.96	30.63
CDX88669	Canola	plastid	40.66	30.41
CDY02811	Canola	plastid	40.36	30.32
CDY32711	Canola	plastid	40.36	30.25

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:1.4.2	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.1.1.3	GO:A0A078FRJ6
UniProt:A0A078FRJ6	EnsemblPlants:CDY15504	ProteinID:CDY15504	ProteinID:CDY15504.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0019752	GO:GO:0030060
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00089674001	InterPro:IPR015955	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N
InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS	InterPro:Malate_DH_NAD-dep_euk	InterPro:Malate_DH_type2	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056
PFAM:PF02866	PIRSF:PIRSF000102	ScanProsite:PS00068	PANTHER:PTHR23382	PANTHER:PTHR23382:SF7	MetaCyc:PWY-1622
MetaCyc:PWY-5392	MetaCyc:PWY-561	MetaCyc:PWY-5690	MetaCyc:PWY-5913	MetaCyc:PWY-6728	MetaCyc:PWY-6969
MetaCyc:PWY-7115	MetaCyc:PWY-7383	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01758	TIGRFAMs:TIGR01759
UniParc:UPI0004EEB32B	SEG:seg	:	:	:	:

Description

BnaA08g27880DMalate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A078FRJ6]

Coordinates

chrLK032055:-:272543..275049

Molecular Weight (calculated)

35790.3 Da

IEP (calculated)

6.514

GRAVY (calculated)

-0.005

Length

332 amino acids

Sequence
(BLAST)

001: MAKEPVRVLV TGAAGQIGYA LVPMIARGIM LGADQPVILH MLDIPFAAEA LNGVKMELID AAFPLLKGVV ATTDAVEGCT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQAAALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNITCLTRLD HNRALGQISE RLSVPVSDVK NVIIWGNHSS TQYPDVNHAK
201: VQTSSGEKPV RELVKNDEWL NGEFITTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVL GTPEGTFVSM GVYSDGSYNV PSGLIYSFPV TCRNGEWDIV
301: QGLPIDEVSR KKMDLTAEEL KEEKDLAYSC LS

Best Arabidopsis Sequence Match ( AT1G04410.1 )
(BLAST)

001: MAKEPVRVLV TGAAGQIGYA LVPMIARGIM LGADQPVILH MLDIPPAAEA LNGVKMELID AAFPLLKGVV ATTDAVEGCT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQAAALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNISCLTRLD HNRALGQISE RLSVPVSDVK NVIIWGNHSS SQYPDVNHAK
201: VQTSSGEKPV RELVKDDAWL DGEFISTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVL GTPEGTFVSM GVYSDGSYSV PSGLIYSFPV TCRNGDWSIV
301: QGLPIDEVSR KKMDLTAEEL KEEKDLAYSC LS

Arabidopsis Description

MDH1Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178W4H0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.