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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • cytosol 3
  • plastid 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • peroxisome 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:cytosol
EpiLoc:plastid
iPSORT:secretory
MultiLoc:peroxisome
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
extracellular: 18372294
extracellular: 21347307
extracellular: 23159799
extracellular: 24083427
nucleus: 26035336
extracellular: 26072143
plasma membrane: 27800704
plastid: 27992503
extracellular: 28232208
msms PMID: 26072143 doi
B Du, Z Wei, Z Wang, X Wang, X Peng, B Du, R Chen, L Zhu, G He
State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 21347307 doi
L Zhou, SA Bokhari, CJ Dong, JY Liu
Laboratory of Molecular Biology, School of Life Sciences, Tsinghua University, Beijing, People's Republic of China.
msms PMID: 26035336 doi
M Li, X Yin, K Sakata, P Yang, S Komatsu
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID: 23159799 doi
SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang
Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 24083427 doi
T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu
Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.
msms PMID: 18372294 doi
T Aki, M Shigyo, R Nakano, T Yoneyama, S Yanagisawa
Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, 113-8657 Japan.
msms PMID: 28232208 doi
Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d032695_P001 Maize plasma membrane 94.28 94.28
EER94077 Sorghum peroxisome 93.98 93.98
TraesCS1D01G153900.1 Wheat golgi, plastid 93.07 92.79
TraesCS1B01G172400.1 Wheat golgi 93.07 92.79
HORVU1Hr1G041250.5 Barley extracellular 93.07 92.79
Solyc09g090140.2.1 Tomato plastid 91.57 91.57
PGSC0003DMT400044217 Potato cytosol 91.57 91.57
TraesCS1A01G155200.1 Wheat endoplasmic reticulum 90.36 91.46
Zm00001d014030_P001 Maize cytosol, endoplasmic reticulum, peroxisome 85.54 91.03
VIT_07s0005g03360.t01 Wine grape extracellular 90.66 90.66
KRH31702 Soybean endoplasmic reticulum 89.46 90.55
AT5G43330.1 Thale cress cytosol, endoplasmic reticulum, peroxisome 90.36 90.36
GSMUA_Achr4P21920_001 Banana cytosol, endoplasmic reticulum, peroxisome 90.36 90.36
CDX98109 Canola cytosol, endoplasmic reticulum, peroxisome 59.34 89.95
GSMUA_Achr5P03900_001 Banana plasma membrane 89.76 89.76
CDY43609 Canola peroxisome 89.46 89.46
CDY32953 Canola peroxisome 89.46 89.46
KRH69119 Soybean mitochondrion, nucleus 89.46 89.46
Bra027485.1-P Field mustard peroxisome 89.46 89.46
CDY15504 Canola cytosol, endoplasmic reticulum, peroxisome 89.16 89.16
CDY67454 Canola cytosol, endoplasmic reticulum, peroxisome 88.86 88.86
CDY18230 Canola peroxisome 88.86 88.86
CDX89826 Canola peroxisome 88.55 88.55
AT1G04410.1 Thale cress peroxisome 88.55 88.55
Bra030569.1-P Field mustard cytosol, golgi, peroxisome 88.25 88.25
Bra015314.1-P Field mustard peroxisome 87.65 87.65
VIT_07s0005g03350.t01 Wine grape plastid 90.66 82.47
Os04t0551200-01 Rice mitochondrion, plasma membrane, plastid 73.49 69.32
Os08t0562100-01 Rice plastid 39.76 30.48
Protein Annotations
KEGG:00020+1.1.1.37KEGG:00270+1.1.1.37KEGG:00620+1.1.1.37KEGG:00630+1.1.1.37KEGG:00680+1.1.1.37KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37MapMan:1.4.2Gene3D:3.40.50.720Gene3D:3.90.110.10EntrezGene:4348905MapMan:5.1.1.3
UniProt:A1YQK1ProteinID:AAG13573.1ProteinID:AAP54283.1ProteinID:ABG66141.1EMBL:AF353203EMBL:AK066396
EMBL:AK104691ProteinID:BAF26774.1ProteinID:BAT11312.1ProteinID:EAZ16427.1EMBL:EF122494GO:GO:0003674
GO:GO:0003824GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005975
GO:GO:0006091GO:GO:0006099GO:GO:0006107GO:GO:0006108GO:GO:0006139GO:GO:0006734
GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016491GO:GO:0016615GO:GO:0016616
GO:GO:0019752GO:GO:0030060GO:GO:0055114InterPro:IPR015955EMBL:KJ909983InterPro:L-lactate/malate_DH
InterPro:Lactate/malate_DH_CInterPro:Lactate/malate_DH_NInterPro:Lactate_DH/Glyco_Ohase_4_CInterPro:Malate_DH_ASInterPro:Malate_DH_NAD-dep_eukInterPro:Malate_DH_type2
InterPro:NAD(P)-bd_dom_sfEnsemblPlantsGene:Os10g0478200EnsemblPlants:Os10t0478200-01PFAM:PF00056PFAM:PF02866PIRSF:PIRSF000102
ScanProsite:PS00068PANTHER:PTHR23382PANTHER:PTHR23382:SF7UniProt:Q7XDC8SUPFAM:SSF51735SUPFAM:SSF56327
TIGRFAMs:TIGR01758TIGRFAMs:TIGR01759UniParc:UPI00000AA8F9RefSeq:XP_015614294.1SEG:seg:
Description
CYTOPLASMIC MALATE DEHYDROGENASECytoplasmic malate dehydrogenase. (Os10t0478200-01)
Coordinates
chr10:+:17913831..17917765
Molecular Weight (calculated)
35570.9 Da
IEP (calculated)
5.973
GRAVY (calculated)
0.007
Length
332 amino acids
Sequence
(BLAST)
001: MAKEPMRVLV TGAAGQIGYA LVPMIARGVM LGADQPVILH MLDIPPATES LNGLKMELVD AAFPLLKGIV ATTDVVEACT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQASALEAH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNITCLTRLD HNRALGQISE KLNVQVTDVK NAIIWGNHSS TQYPDVNHAT
201: VKTPSGEKPV RELVADDEWL NTEFISTVQQ RGAAIIKARK QSSALSAASS ACDHIRDWVL GTPEGTFVSM GVYSDGSYGV PAGLIYSFPV TCSGGEWTIV
301: QGLPIDEFSR KKMDATAQEL SEEKTLAYSC LN
Best Arabidopsis Sequence Match ( AT5G43330.1 )
(BLAST)
001: MAKEPVRVLV TGAAGQIGYA LVPMIARGIM LGADQPVILH MLDIPFAAEA LNGVKMELVD AAFPLLKGVV ATTDAVEACT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQASALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNITCLTRLD HNRALGQVSE RLSVPVSDVK NVIIWGNHSS TQYPDVNHAT
201: VKTSVGEKPV RELVKNDEWL NGEFISTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVV GTPEGTFVSM GVYSDGSYNV PAGLIYSFPV TCRNGEWTIV
301: QGLPIDDASR KKMDLTAEEL KEEKDLAYSC LS
Arabidopsis Description
MDH2Malate dehydrogenase 2, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:P57106]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.