Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- cytosol 3
- plastid 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- peroxisome 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
extracellular:
18372294
extracellular: 21347307 extracellular: 23159799 extracellular: 24083427 nucleus: 26035336 extracellular: 26072143 plasma membrane: 27800704 plastid: 27992503 extracellular: 28232208 |
msms PMID:
26072143
doi
State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
21347307
doi
Laboratory of Molecular Biology, School of Life Sciences, Tsinghua University, Beijing, People's Republic of China.
msms PMID:
26035336
doi
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID:
23159799
doi
Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID:
24083427
doi
Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.
msms PMID:
18372294
doi
Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, 113-8657 Japan.
msms PMID:
28232208
doi
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Zm00001d032695_P001 | Maize | plasma membrane | 94.28 | 94.28 |
EER94077 | Sorghum | peroxisome | 93.98 | 93.98 |
TraesCS1D01G153900.1 | Wheat | golgi, plastid | 93.07 | 92.79 |
TraesCS1B01G172400.1 | Wheat | golgi | 93.07 | 92.79 |
HORVU1Hr1G041250.5 | Barley | extracellular | 93.07 | 92.79 |
Solyc09g090140.2.1 | Tomato | plastid | 91.57 | 91.57 |
PGSC0003DMT400044217 | Potato | cytosol | 91.57 | 91.57 |
TraesCS1A01G155200.1 | Wheat | endoplasmic reticulum | 90.36 | 91.46 |
Zm00001d014030_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome | 85.54 | 91.03 |
VIT_07s0005g03360.t01 | Wine grape | extracellular | 90.66 | 90.66 |
KRH31702 | Soybean | endoplasmic reticulum | 89.46 | 90.55 |
AT5G43330.1 | Thale cress | cytosol, endoplasmic reticulum, peroxisome | 90.36 | 90.36 |
GSMUA_Achr4P21920_001 | Banana | cytosol, endoplasmic reticulum, peroxisome | 90.36 | 90.36 |
CDX98109 | Canola | cytosol, endoplasmic reticulum, peroxisome | 59.34 | 89.95 |
GSMUA_Achr5P03900_001 | Banana | plasma membrane | 89.76 | 89.76 |
CDY43609 | Canola | peroxisome | 89.46 | 89.46 |
CDY32953 | Canola | peroxisome | 89.46 | 89.46 |
KRH69119 | Soybean | mitochondrion, nucleus | 89.46 | 89.46 |
Bra027485.1-P | Field mustard | peroxisome | 89.46 | 89.46 |
CDY15504 | Canola | cytosol, endoplasmic reticulum, peroxisome | 89.16 | 89.16 |
CDY67454 | Canola | cytosol, endoplasmic reticulum, peroxisome | 88.86 | 88.86 |
CDY18230 | Canola | peroxisome | 88.86 | 88.86 |
CDX89826 | Canola | peroxisome | 88.55 | 88.55 |
AT1G04410.1 | Thale cress | peroxisome | 88.55 | 88.55 |
Bra030569.1-P | Field mustard | cytosol, golgi, peroxisome | 88.25 | 88.25 |
Bra015314.1-P | Field mustard | peroxisome | 87.65 | 87.65 |
VIT_07s0005g03350.t01 | Wine grape | plastid | 90.66 | 82.47 |
Os04t0551200-01 | Rice | mitochondrion, plasma membrane, plastid | 73.49 | 69.32 |
Os08t0562100-01 | Rice | plastid | 39.76 | 30.48 |
Protein Annotations
Description
CYTOPLASMIC MALATE DEHYDROGENASECytoplasmic malate dehydrogenase. (Os10t0478200-01)
Coordinates
chr10:+:17913831..17917765
Molecular Weight (calculated)
35570.9 Da
IEP (calculated)
5.973
GRAVY (calculated)
0.007
Length
332 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKEPMRVLV TGAAGQIGYA LVPMIARGVM LGADQPVILH MLDIPPATES LNGLKMELVD AAFPLLKGIV ATTDVVEACT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQASALEAH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNITCLTRLD HNRALGQISE KLNVQVTDVK NAIIWGNHSS TQYPDVNHAT
201: VKTPSGEKPV RELVADDEWL NTEFISTVQQ RGAAIIKARK QSSALSAASS ACDHIRDWVL GTPEGTFVSM GVYSDGSYGV PAGLIYSFPV TCSGGEWTIV
301: QGLPIDEFSR KKMDATAQEL SEEKTLAYSC LN
101: DVMSKNVSIY KSQASALEAH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNITCLTRLD HNRALGQISE KLNVQVTDVK NAIIWGNHSS TQYPDVNHAT
201: VKTPSGEKPV RELVADDEWL NTEFISTVQQ RGAAIIKARK QSSALSAASS ACDHIRDWVL GTPEGTFVSM GVYSDGSYGV PAGLIYSFPV TCSGGEWTIV
301: QGLPIDEFSR KKMDATAQEL SEEKTLAYSC LN
001: MAKEPVRVLV TGAAGQIGYA LVPMIARGIM LGADQPVILH MLDIPFAAEA LNGVKMELVD AAFPLLKGVV ATTDAVEACT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQASALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNITCLTRLD HNRALGQVSE RLSVPVSDVK NVIIWGNHSS TQYPDVNHAT
201: VKTSVGEKPV RELVKNDEWL NGEFISTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVV GTPEGTFVSM GVYSDGSYNV PAGLIYSFPV TCRNGEWTIV
301: QGLPIDDASR KKMDLTAEEL KEEKDLAYSC LS
101: DVMSKNVSIY KSQASALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNITCLTRLD HNRALGQVSE RLSVPVSDVK NVIIWGNHSS TQYPDVNHAT
201: VKTSVGEKPV RELVKNDEWL NGEFISTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVV GTPEGTFVSM GVYSDGSYNV PAGLIYSFPV TCRNGEWTIV
301: QGLPIDDASR KKMDLTAEEL KEEKDLAYSC LS
Arabidopsis Description
MDH2Malate dehydrogenase 2, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:P57106]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.