Factsheet for GSMUA_Achr5P03900_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 2
plastid 2
peroxisome 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	peroxisome
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P21920_001	Banana	cytosol, endoplasmic reticulum, peroxisome	95.78	95.78
Solyc09g090140.2.1	Tomato	plastid	91.87	91.87
KRH31702	Soybean	endoplasmic reticulum	90.66	91.77
PGSC0003DMT400044217	Potato	cytosol	91.57	91.57
VIT_07s0005g03360.t01	Wine grape	extracellular	91.27	91.27
Zm00001d032695_P001	Maize	plasma membrane	90.96	90.96
CDX98109	Canola	cytosol, endoplasmic reticulum, peroxisome	59.94	90.87
KRH69119	Soybean	mitochondrion, nucleus	90.66	90.66
AT5G43330.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	90.36	90.36
EER94077	Sorghum	peroxisome	90.36	90.36
CDY32953	Canola	peroxisome	90.36	90.36
Bra027485.1-P	Field mustard	peroxisome	90.36	90.36
CDY43609	Canola	peroxisome	90.36	90.36
Os10t0478200-01	Rice	extracellular	89.76	89.76
CDY15504	Canola	cytosol, endoplasmic reticulum, peroxisome	89.46	89.46
HORVU1Hr1G041250.5	Barley	extracellular	89.46	89.19
TraesCS1D01G153900.1	Wheat	golgi, plastid	89.16	88.89
TraesCS1B01G172400.1	Wheat	golgi	89.16	88.89
AT1G04410.1	Thale cress	peroxisome	88.86	88.86
CDY18230	Canola	peroxisome	88.86	88.86
CDX89826	Canola	peroxisome	88.55	88.55
Bra030569.1-P	Field mustard	cytosol, golgi, peroxisome	88.55	88.55
CDY67454	Canola	cytosol, endoplasmic reticulum, peroxisome	88.55	88.55
Zm00001d014030_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	83.13	88.46
TraesCS1A01G155200.1	Wheat	endoplasmic reticulum	87.05	88.11
Bra015314.1-P	Field mustard	peroxisome	87.35	87.35
VIT_07s0005g03350.t01	Wine grape	plastid	91.27	83.01
GSMUA_Achr5P13450_001	Banana	cytosol	77.11	82.85
GSMUA_AchrUn_...	Banana	cytosol	27.11	36.44
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, golgi, peroxisome	39.76	27.1
GSMUA_AchrUn_...	Banana	nucleus, peroxisome, plastid	8.73	21.48

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:1.4.2	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.1.1.3	GO:GO:0003674
GO:GO:0003824	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0019752
GO:GO:0030060	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr5G03900_001	EnsemblPlants:GSMUA_Achr5P03900_001	EnsemblPlants:GSMUA_Achr5T03900_001	InterPro:IPR015955
InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	UniProt:M0SVG9	HAMAP:MF_01517
InterPro:Malate_DH_AS	InterPro:Malate_DH_NAD-dep_euk	InterPro:Malate_DH_type2	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866
PIRSF:PIRSF000102	ScanProsite:PS00068	PANTHER:PTHR23382	PANTHER:PTHR23382:SF7	SUPFAM:SSF51735	SUPFAM:SSF56327
TIGRFAMs:TIGR01758	TIGRFAMs:TIGR01759	UniParc:UPI000296CC9F	SEG:seg	:	:

Description

Malate dehydrogenase, cytoplasmic [Source:GMGC_GENE;Acc:GSMUA_Achr5G03900_001]

Coordinates

chr5:+:2752092..2758313

Molecular Weight (calculated)

35528.0 Da

IEP (calculated)

7.087

GRAVY (calculated)

0.045

Length

332 amino acids

Sequence
(BLAST)

001: MAKDPVRVLV TGAAGQIGYA LVPMIARGVM LGPDQPVLLH MLDIPPAAEA LNGVKMELVD AAFPLLKGVV ATTDAVEACT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQASALEAH AAPNCKVLVV ANPANTNALI LKEFAPSIPA KNITCLTRLD HNRALGQISE RLNIQVSDVK NVIIWGNHSS TQYPDVSHAT
201: IKTPSGQKPV RELVSDDDWL KGEFIKTVQQ RGAAIIKARK LSSALSAASA ACDHIRDWVL GTPEGTWVSM GVYSDGSYNV PAGLIYSFPV TCRAGEWTIV
301: QGLSVDEFSR KKMDATAEEL TEEKALAYSC LS

Best Arabidopsis Sequence Match ( AT5G43330.1 )
(BLAST)

001: MAKEPVRVLV TGAAGQIGYA LVPMIARGIM LGADQPVILH MLDIPFAAEA LNGVKMELVD AAFPLLKGVV ATTDAVEACT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQASALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNITCLTRLD HNRALGQVSE RLSVPVSDVK NVIIWGNHSS TQYPDVNHAT
201: VKTSVGEKPV RELVKNDEWL NGEFISTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVV GTPEGTFVSM GVYSDGSYNV PAGLIYSFPV TCRNGEWTIV
301: QGLPIDDASR KKMDLTAEEL KEEKDLAYSC LS

Arabidopsis Description

MDH2Malate dehydrogenase 2, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:P57106]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.