CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	peroxisome
Plant-mPloc:	mitochondrion, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU78269

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04410.1	OQU78269	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032695_P001	Maize	plasma membrane	97.59	97.59
Zm00001d014030_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	89.76	95.51
Os10t0478200-01	Rice	extracellular	93.98	93.98
TraesCS1D01G153900.1	Wheat	golgi, plastid	93.98	93.69
Solyc09g090140.2.1	Tomato	plastid	93.67	93.67
PGSC0003DMT400044217	Potato	cytosol	93.37	93.37
CDX98109	Canola	cytosol, endoplasmic reticulum, peroxisome	61.45	93.15
TraesCS1B01G172400.1	Wheat	golgi	93.37	93.09
HORVU1Hr1G041250.5	Barley	extracellular	93.07	92.79
VIT_07s0005g03360.t01	Wine grape	extracellular	92.47	92.47
TraesCS1A01G155200.1	Wheat	endoplasmic reticulum	90.96	92.07
CDY43609	Canola	peroxisome	91.87	91.87
GSMUA_Achr4P21920_001	Banana	cytosol, endoplasmic reticulum, peroxisome	91.87	91.87
KRH31702	Soybean	endoplasmic reticulum	90.66	91.77
AT5G43330.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	91.57	91.57
CDY32953	Canola	peroxisome	91.57	91.57
Bra027485.1-P	Field mustard	peroxisome	91.57	91.57
CDY15504	Canola	cytosol, endoplasmic reticulum, peroxisome	91.57	91.57
KRH69119	Soybean	mitochondrion, nucleus	91.57	91.57
CDY67454	Canola	cytosol, endoplasmic reticulum, peroxisome	91.27	91.27
Bra030569.1-P	Field mustard	cytosol, golgi, peroxisome	90.96	90.96
CDX89826	Canola	peroxisome	90.66	90.66
CDY18230	Canola	peroxisome	90.36	90.36
AT1G04410.1	Thale cress	peroxisome	90.36	90.36
GSMUA_Achr5P03900_001	Banana	plasma membrane	90.36	90.36
Bra015314.1-P	Field mustard	peroxisome	89.46	89.46
VIT_07s0005g03350.t01	Wine grape	plastid	92.47	84.11
KXG26853	Sorghum	mitochondrion	70.48	66.1
EES15165	Sorghum	plastid	41.27	31.93
KXG25370	Sorghum	plastid	40.96	31.26

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:1.4.2	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.1.1.3	EntrezGene:8070482
UniProt:C5WYF2	EnsemblPlants:EER94077	ProteinID:EER94077	ProteinID:EER94077.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0006091
GO:GO:0006099	GO:GO:0006107	GO:GO:0006108	GO:GO:0006139	GO:GO:0006734	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0019752
GO:GO:0030060	GO:GO:0055114	InterPro:IPR015955	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N
InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS	InterPro:Malate_DH_NAD-dep_euk	InterPro:Malate_DH_type2	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056
PFAM:PF02866	PIRSF:PIRSF000102	ScanProsite:PS00068	PANTHER:PTHR23382	PANTHER:PTHR23382:SF7	MetaCyc:PWY-1622
MetaCyc:PWY-5392	MetaCyc:PWY-561	MetaCyc:PWY-5690	MetaCyc:PWY-5913	MetaCyc:PWY-6728	MetaCyc:PWY-6969
MetaCyc:PWY-7115	MetaCyc:PWY-7383	EnsemblPlantsGene:SORBI_3001G219300	SUPFAM:SSF51735	SUPFAM:SSF56327	unigene:Sbi.14383
TIGRFAMs:TIGR01758	TIGRFAMs:TIGR01759	UniParc:UPI000189DA4F	RefSeq:XP_002467079.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:20443589..20448787

Molecular Weight (calculated)

35466.8 Da

IEP (calculated)

5.975

GRAVY (calculated)

0.057

Length

332 amino acids

Sequence
(BLAST)

001: MAKDPMRVLV TGAAGQIGYA LVPMIARGVM LGADQPVILH MLDIPPAAEA LNGVKMELVD AAFPLLKGVV ATTDVVEACT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KAQASALEAH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNVTCLTRLD HNRALGQISE RLSVQVSDVK NVIIWGNHSS TQYPDVNHAT
201: VKTSTGEKPV RELVADDEWL NGEFITTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVL GTPEGTFVSM GVYSDGSYGV PSGLIYSFPV TCSGGEWKIV
301: QGLPIDEFSR KKLDATAQEL SEEKTLAYSC LE

Best Arabidopsis Sequence Match ( AT5G43330.1 )
(BLAST)

001: MAKEPVRVLV TGAAGQIGYA LVPMIARGIM LGADQPVILH MLDIPFAAEA LNGVKMELVD AAFPLLKGVV ATTDAVEACT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQASALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNITCLTRLD HNRALGQVSE RLSVPVSDVK NVIIWGNHSS TQYPDVNHAT
201: VKTSVGEKPV RELVKNDEWL NGEFISTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVV GTPEGTFVSM GVYSDGSYNV PAGLIYSFPV TCRNGEWTIV
301: QGLPIDDASR KKMDLTAEEL KEEKDLAYSC LS

Arabidopsis Description

MDH2Malate dehydrogenase 2, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:P57106]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.