CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU78269

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58330.1	OQU78269	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031899_P002	Maize	plastid	93.24	92.59
KXG25370	Sorghum	plastid	92.31	91.03
TraesCSU01G135100.2	Wheat	plastid	84.15	83.76
Os08t0562100-01	Rice	plastid	84.15	83.37
TraesCS7B01G197000.2	Wheat	mitochondrion, plastid	83.45	83.06
HORVU4Hr1G090080.1	Barley	cytosol	69.7	82.6
HORVU7Hr1G060260.5	Barley	plastid	82.75	81.99
TraesCS7D01G283900.1	Wheat	golgi	82.05	81.67
TraesCS5A01G549900.1	Wheat	cytosol	72.49	79.95
GSMUA_AchrUn_...	Banana	cytosol	45.92	79.76
TraesCSU01G127700.1	Wheat	plastid	72.26	79.69
CDY58562	Canola	plastid	79.25	76.58
Bra006772.1-P	Field mustard	plastid	79.02	76.35
CDX88669	Canola	plastid	79.02	76.35
CDY02811	Canola	plastid	78.55	76.24
VIT_13s0019g05250.t01	Wine grape	plastid	77.62	76.2
CDY32993	Canola	plastid	78.32	76.02
CDY32711	Canola	plastid	78.32	75.85
CDY43863	Canola	plastid	78.09	75.62
Bra020374.1-P	Field mustard	plastid	78.09	75.62
Bra002660.1-P	Field mustard	plastid	77.86	75.57
KRH34668	Soybean	plastid	76.22	75.0
AT5G58330.1	Thale cress	plastid	77.39	74.94
PGSC0003DMT400079767	Potato	cytosol, plastid	76.46	74.89
KRG92120	Soybean	plastid	73.66	74.53
Solyc11g007990.1.1	Tomato	plastid	76.46	74.21
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, golgi, peroxisome	78.79	69.4
Solyc03g071590.2.1	Tomato	plastid	74.36	68.31
GSMUA_AchrUn_...	Banana	nucleus, peroxisome, plastid	18.88	60.0
EER94077	Sorghum	peroxisome	31.93	41.27
KXG26853	Sorghum	mitochondrion	32.17	38.98

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00620+1.1.1.82	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37
KEGG:00710+1.1.1.37	KEGG:00710+1.1.1.82	KEGG:00720+1.1.1.37	MapMan:1.2.12	Gene3D:3.40.50.720	Gene3D:3.90.110.10
PDB:7MDH	EntrezGene:8057802	ProteinID:AAA34047.1	UniProt:C5YMV5	EnsemblPlants:EES15165	ProteinID:EES15165
ProteinID:EES15165.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006107
GO:GO:0006108	GO:GO:0006139	GO:GO:0006734	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0030060
GO:GO:0046554	GO:GO:0055114	InterPro:IPR015955	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C
InterPro:Malate_DH_AS	InterPro:Malate_DH_NADP-dep_pln	InterPro:Malate_DH_type2	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866
ScanProsite:PS00068	PANTHER:PTHR23382	PANTHER:PTHR23382:SF0	MetaCyc:PWY-1622	MetaCyc:PWY-241	MetaCyc:PWY-5392
MetaCyc:PWY-561	MetaCyc:PWY-5690	MetaCyc:PWY-5913	MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7115
MetaCyc:PWY-7117	MetaCyc:PWY-7383	EnsemblPlantsGene:SORBI_3007G166300	SUPFAM:SSF51735	SUPFAM:SSF56327	unigene:Sbi.76
TIGRFAMs:TIGR01757	TIGRFAMs:TIGR01759	UniParc:UPI000012EE2A	EMBL:X53453	RefSeq:XP_002445670.1	SEG:seg

Description

hypothetical protein

Coordinates

chr7:-:60149510..60153216

Molecular Weight (calculated)

46457.5 Da

IEP (calculated)

5.961

GRAVY (calculated)

-0.149

Length

429 amino acids

Sequence
(BLAST)

001: MGLSTAYSPV GSHLAPAPLG HRRSAQLHRP RRALLATVRC SVDAAKQVQD GVATAEAPAT RKDCFGVFCT TYDLKAEDKT KSWKKLVNIA VSGAAGMISN
101: HLLFKLASGE VFGQDQPIAL KLLGSERSFQ ALEGVAMELE DSLYPLLREV SIGIDPYEVF EDVDWALLIG AKPRGPGMER AALLDINGQI FADQGKALNA
201: VASKNVKVLV VGNPCNTNAL ICLKNAPDIP AKNFHALTRL DENRAKCQLA LKAGVFYDKV SNVTIWGNHS TTQVPDFLNA KIDGRPVKEV IKDTKWLEEE
301: FTITVQKRGG ALIQKWGRSS AASTAVSIAD AIKSLVTPTP EGDWFSTGVY TTGNPYGIAE DIVFSMPCRS KGDGDYELAT DVSMDDFLWE RIKKSEAELL
401: AEKKCVAHLT GEGNAYCDVP EDTMLPGEV

Best Arabidopsis Sequence Match ( AT5G58330.1 )
(BLAST)

001: MAMAELSTPK TTSPFLNSSS RLRLSSKLHL SNHFRHLLLP PLHTTTPNSK ISCSVSQNSQ APVAVQENGL VKTKKECYGV FCLTYDLKAE EETRSWKKLI
101: NIAVSGAAGM ISNHLLFKLA SGEVFGPDQP IALKLLGSER SIQALEGVAM ELEDSLFPLL REVDIGTDPN EVFQDVEWAI LIGAKPRGPG MERADLLDIN
201: GQIFAEQGKA LNKAASPNVK VLVVGNPCNT NALICLKNAP NIPAKNFHAL TRLDENRAKC QLALKAGVFY DKVSNMTIWG NHSTTQVPDF LNARINGLPV
301: KEVITDHKWL EEGFTESVQK RGGLLIQKWG RSSAASTAVS IVDAIKSLVT PTPEGDWFST GVYTDGNPYG IEEGLVFSMP CRSKGDGDYE LVKDVEIDDY
401: LRQRIAKSEA ELLAEKRCVA HLTGEGIAYC DLGPVDTMLP GEV

Arabidopsis Description

Malate dehydrogenase [NADP], chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.