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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 11
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:plastid
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
 plastid: 20363867
plastid: 22908117
plastid: 26371478
nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400079767 Potato cytosol, plastid 97.74 98.63
VIT_13s0019g05250.t01 Wine grape plastid 81.67 82.61
HORVU4Hr1G090080.1 Barley cytosol 67.42 82.32
GSMUA_AchrUn_... Banana cytosol 45.7 81.78
KRH34668 Soybean plastid 79.86 80.96
KRG92120 Soybean plastid 77.38 80.66
Os08t0562100-01 Rice plastid 76.92 78.52
Zm00001d031899_P002 Maize plastid 76.47 78.24
TraesCS7D01G283900.1 Wheat golgi 76.02 77.96
Bra002660.1-P Field mustard plastid 77.6 77.6
CDY02811 Canola plastid 77.6 77.6
CDY32711 Canola plastid 77.6 77.43
Bra020374.1-P Field mustard plastid 77.6 77.43
TraesCSU01G127700.1 Wheat plastid 68.1 77.38
TraesCS5A01G549900.1 Wheat cytosol 68.1 77.38
CDY43863 Canola plastid 77.38 77.2
CDY32993 Canola plastid 77.15 77.15
TraesCS7B01G197000.2 Wheat mitochondrion, plastid 75.11 77.03
Bra006772.1-P Field mustard plastid 77.38 77.03
CDX88669 Canola plastid 77.38 77.03
CDY58562 Canola plastid 76.92 76.58
TraesCSU01G135100.2 Wheat plastid 74.66 76.57
EES15165 Sorghum plastid 74.21 76.46
AT5G58330.1 Thale cress plastid 76.47 76.3
KXG25370 Sorghum plastid 74.66 75.86
HORVU7Hr1G060260.5 Barley plastid 74.21 75.75
Solyc03g071590.2.1 Tomato plastid 78.51 74.3
GSMUA_AchrUn_... Banana endoplasmic reticulum, golgi, peroxisome 75.34 68.38
GSMUA_AchrUn_... Banana nucleus, peroxisome, plastid 17.42 57.04
Solyc09g090140.2.1 Tomato plastid 30.09 40.06
Solyc01g090710.2.1 Tomato cytosol, unclear 29.86 39.52
Protein Annotations
KEGG:00020+1.1.1.37KEGG:00270+1.1.1.37KEGG:00620+1.1.1.37KEGG:00620+1.1.1.82KEGG:00630+1.1.1.37KEGG:00680+1.1.1.37
KEGG:00710+1.1.1.37KEGG:00710+1.1.1.82KEGG:00720+1.1.1.37MapMan:1.2.12Gene3D:3.40.50.720Gene3D:3.90.110.10
EMBL:AJ849379GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005739GO:GO:0005975GO:GO:0006091GO:GO:0006099GO:GO:0006107
GO:GO:0006108GO:GO:0006139GO:GO:0006734GO:GO:0008150GO:GO:0008152GO:GO:0009507
GO:GO:0009536GO:GO:0009987GO:GO:0016491GO:GO:0016615GO:GO:0016616GO:GO:0030060
GO:GO:0046554GO:GO:0055114InterPro:IPR015955InterPro:Lactate/malate_DH_CInterPro:Lactate/malate_DH_NInterPro:Lactate_DH/Glyco_Ohase_4_C
InterPro:Malate_DH_ASInterPro:Malate_DH_NADP-dep_plnInterPro:Malate_DH_type2InterPro:NAD(P)-bd_dom_sfPFAM:PF00056PFAM:PF02866
ScanProsite:PS00068PANTHER:PTHR23382PANTHER:PTHR23382:SF0UniProt:Q5NE17SUPFAM:SSF51735SUPFAM:SSF56327
EnsemblPlantsGene:Solyc11g007990.1EnsemblPlants:Solyc11g007990.1.1TIGRFAMs:TIGR01757TIGRFAMs:TIGR01759UniParc:UPI000049ADC1:
Description
Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:Q5NE17]
Coordinates
chr11:+:2198505..2203902
Molecular Weight (calculated)
48452.1 Da
IEP (calculated)
6.621
GRAVY (calculated)
-0.171
Length
442 amino acids
Sequence
(BLAST)
001: MAVAEFIPSS SSLTKKASFY SSQLSNVSTK ISHQRRLSFK PLLRTHNHSQ ICCSVTSKEA QATTVVQTDD PKKKSECYGV FCLTYDLKAE EETSSWKKMI
101: TVSVSGAAGM IANHLLFKLA SGEVFGPDQP IALRLLGSER SIQALEGVAM ELEDSLYPLL REVNIGIDPY EVFQDAEWAL LIGAKPRGPG MERAGLLDIN
201: GQIFAEQGKA LNAVASRNVK VIVVGNPCNT NALICLKNAP NIPAKNFHAL TRLDENRAKC QLALKAGVFY DKVSNVTIWG NHSTTQVPDF LNAKINGLPV
301: KEVIKDTKWL EEEFTEKVQK RGGVLIQKWG RSSAASTAVS IVDAIRSLVT PTPEGDWFST GVYTNGNPYG IAQDIVFSMP CRSKGDGDYE LVKEVIFDDY
401: LWNRIKKSED ELLAEKRCVA HLTGEGIAVC DLPGDTMLPG EM
Best Arabidopsis Sequence Match ( AT5G58330.1 )
(BLAST)
001: MAMAELSTPK TTSPFLNSSS RLRLSSKLHL SNHFRHLLLP PLHTTTPNSK ISCSVSQNSQ APVAVQENGL VKTKKECYGV FCLTYDLKAE EETRSWKKLI
101: NIAVSGAAGM ISNHLLFKLA SGEVFGPDQP IALKLLGSER SIQALEGVAM ELEDSLFPLL REVDIGTDPN EVFQDVEWAI LIGAKPRGPG MERADLLDIN
201: GQIFAEQGKA LNKAASPNVK VLVVGNPCNT NALICLKNAP NIPAKNFHAL TRLDENRAKC QLALKAGVFY DKVSNMTIWG NHSTTQVPDF LNARINGLPV
301: KEVITDHKWL EEGFTESVQK RGGLLIQKWG RSSAASTAVS IVDAIKSLVT PTPEGDWFST GVYTDGNPYG IEEGLVFSMP CRSKGDGDYE LVKDVEIDDY
401: LRQRIAKSEA ELLAEKRCVA HLTGEGIAYC DLGPVDTMLP GEV
Arabidopsis Description
Malate dehydrogenase [NADP], chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E2]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.