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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: unclear, cytosol

Predictor Summary:
  • cytosol 4
  • plastid 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, unclear
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:cytosol
EpiLoc:plastid
iPSORT:secretory
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 unclear: 26455813
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_15s0021g02410.t01 Wine grape cytosol 86.83 87.35
Solyc09g090140.2.1 Tomato plastid 84.43 84.94
GSMUA_Achr5P13450_001 Banana cytosol 76.95 83.17
PGSC0003DMT400066960 Potato mitochondrion 79.64 78.7
KRH19181 Soybean endoplasmic reticulum 84.73 75.87
AT5G56720.1 Thale cress cytosol, endoplasmic reticulum 74.25 66.67
CDY32764 Canola endoplasmic reticulum 73.95 66.22
Bra002797.1-P Field mustard endoplasmic reticulum 73.65 65.95
CDY32878 Canola endoplasmic reticulum, golgi, plasma membrane 73.65 65.95
VIT_01s0010g03100.t01 Wine grape cytosol 10.18 60.71
Solyc11g007990.1.1 Tomato plastid 39.52 29.86
Solyc03g071590.2.1 Tomato plastid 38.62 27.62
Protein Annotations
KEGG:00020+1.1.1.37KEGG:00270+1.1.1.37KEGG:00620+1.1.1.37KEGG:00630+1.1.1.37KEGG:00680+1.1.1.37KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37MapMan:1.4.2Gene3D:3.40.50.720Gene3D:3.90.110.10MapMan:5.1.1.3EMBL:AY725475
GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005975GO:GO:0006091GO:GO:0006099GO:GO:0006107GO:GO:0006108GO:GO:0006139
GO:GO:0006734GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016491GO:GO:0016615
GO:GO:0016616GO:GO:0019752GO:GO:0030060GO:GO:0055114InterPro:IPR015955InterPro:L-lactate/malate_DH
InterPro:Lactate/malate_DH_CInterPro:Lactate/malate_DH_NInterPro:Lactate_DH/Glyco_Ohase_4_CInterPro:Malate_DH_ASInterPro:Malate_DH_NAD-dep_eukInterPro:Malate_DH_type2
InterPro:NAD(P)-bd_dom_sfPFAM:PF00056PFAM:PF02866PIRSF:PIRSF000102ScanProsite:PS00068PANTHER:PTHR23382
PANTHER:PTHR23382:SF7UniProt:Q645N0SUPFAM:SSF51735SUPFAM:SSF56327EnsemblPlantsGene:Solyc01g090710.2EnsemblPlants:Solyc01g090710.2.1
TIGRFAMs:TIGR01758TIGRFAMs:TIGR01759TMHMM:TMhelixUniParc:UPI000044080ESEG:seg:
Description
Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:Q645N0]
Coordinates
chr1:+:84349917..84352603
Molecular Weight (calculated)
35883.4 Da
IEP (calculated)
6.936
GRAVY (calculated)
0.031
Length
334 amino acids
Sequence
(BLAST)
001: MNIEKDPITV LVTGAAGQIG YALVPMIARG AMLGLDQPVI IHMLDIEPAA ESLKGVKMEL IDAAFPLLKD VVATTNVVEA CKGVNVAVMV GGFPRKEGME
101: RKDVMTKNVS IYKAQASALE QHAAPDCKVL VVANPANTNA LILKEFAPSF PAKNITCLTR LDHNRALGQI SEKLNVHVGD VKNVAIWGNH SSTQYPDVNH
201: ATVKTAAGEK PVRELVANDQ WLNTEFITTV QQRGAAIIKA RKLSSALSAA SSACDHIHDW VLGTPKGTWV SMGVYSDGSY GIPAGLIYSF PVTCEKGEWS
301: IVQGLKIDEF SRAKMDATAK ELAEEKSLAY SCLN
Best Arabidopsis Sequence Match ( AT5G43330.1 )
(BLAST)
001: MAKEPVRVLV TGAAGQIGYA LVPMIARGIM LGADQPVILH MLDIPFAAEA LNGVKMELVD AAFPLLKGVV ATTDAVEACT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQASALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNITCLTRLD HNRALGQVSE RLSVPVSDVK NVIIWGNHSS TQYPDVNHAT
201: VKTSVGEKPV RELVKNDEWL NGEFISTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVV GTPEGTFVSM GVYSDGSYNV PAGLIYSFPV TCRNGEWTIV
301: QGLPIDDASR KKMDLTAEEL KEEKDLAYSC LS
Arabidopsis Description
MDH2Malate dehydrogenase 2, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:P57106]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.