CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane

Predictor Summary:

cytosol 1
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, plasma membrane
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32764	Canola	endoplasmic reticulum	97.86	97.86
AT5G56720.1	Thale cress	cytosol, endoplasmic reticulum	86.86	87.1
Solyc01g090710.2.1	Tomato	cytosol, unclear	65.95	73.65
VIT_15s0021g02410.t01	Wine grape	cytosol	65.15	73.19
GSMUA_Achr5P13450_001	Banana	cytosol	60.59	73.14
CDY15504	Canola	cytosol, endoplasmic reticulum, peroxisome	63.0	70.78
CDY43609	Canola	peroxisome	63.0	70.78
CDX98109	Canola	cytosol, endoplasmic reticulum, peroxisome	41.55	70.78
CDY32953	Canola	peroxisome	62.73	70.48
CDX89826	Canola	peroxisome	62.47	70.18
CDY18230	Canola	peroxisome	62.47	70.18
CDY67454	Canola	cytosol, endoplasmic reticulum, peroxisome	62.47	70.18
KRH19181	Soybean	endoplasmic reticulum	67.83	67.83
PGSC0003DMT400066960	Potato	mitochondrion	53.89	59.47
VIT_01s0010g03100.t01	Wine grape	cytosol	6.97	46.43
CDX88669	Canola	plastid	38.34	32.21
CDY58562	Canola	plastid	38.34	32.21
CDY32993	Canola	plastid	38.07	32.13
CDY43863	Canola	plastid	38.07	32.05
CDY02811	Canola	plastid	37.8	31.9
CDY32711	Canola	plastid	37.8	31.83

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:1.4.2	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.1.1.3	GO:A0A078H7M1
UniProt:A0A078H7M1	EnsemblPlants:CDY32878	ProteinID:CDY32878	ProteinID:CDY32878.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0016615
GO:GO:0016616	GO:GO:0019752	GO:GO:0030060	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00053008001	InterPro:IPR015955
InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS	InterPro:Malate_DH_NAD-dep_euk
InterPro:Malate_DH_type2	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102	ScanProsite:PS00068
PANTHER:PTHR23382	PANTHER:PTHR23382:SF5	MetaCyc:PWY-1622	MetaCyc:PWY-5392	MetaCyc:PWY-561	MetaCyc:PWY-5690
MetaCyc:PWY-5913	MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7115	MetaCyc:PWY-7383	SUPFAM:SSF51735
SUPFAM:SSF56327	TIGRFAMs:TIGR01758	TIGRFAMs:TIGR01759	TMHMM:TMhelix	UniParc:UPI0004EED172	SEG:seg

Description

BnaC09g33250DMalate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A078H7M1]

Coordinates

chrLK032301:+:174052..175314

Molecular Weight (calculated)

40886.5 Da

IEP (calculated)

5.937

GRAVY (calculated)

0.022

Length

373 amino acids

Sequence
(BLAST)

001: MEVVGGEVDY TFVIQKSLVL LLCVVLSWKM IVYMCNLLKI EKEPIRVLVT GAAGNIGYAI APTIARGMML GQDQPMILHL LDIEPASKSL EAVKMELQDS
101: AFPLLHGVFA TTNIDEACKG VNIAIMIGGF ARKEGMERRE VMSKNAVIFK AQASALERYA SDDCKVLVVA NPANTNALIL KEFAPSIPEE NITCLTRLDH
201: NRAQARLAEK LSVPVSSVKN VIVWGNHSST QYPDSNHATV STKTGDQPVN ELLVADQKWL KNEFITEVQQ RGAEILRARR QSSALSAASA ACDHIHDWFL
301: GTPKGNWVSM GVCSDGSYGI PPGLVYSFPV ICEKGSWKIV QGLNIDEFSR EKMDDSAREL AEEKALAYSC LNV

Best Arabidopsis Sequence Match ( AT5G56720.1 )
(BLAST)

001: MEFVGEEINY TFVIQKVLVL LFCVGLSWKM IIYMCNLLNI EKDPIRVLIT GAAGNIGYAI APMIARGIML GPDQPMILHL LDIEPASSSL EAVKMELQDS
101: AFPLLKGVIA TTNVVEACKD VNIVIMIGGF PRIAGMERKD VMSKNVVIYK AQASALERYA SDDCKVLVVA NPANTNALIL KEFAPSIPEE NITCLTRLDH
201: NRALAQLADK LSVPVSSVKN VIVWGNHSST QYPDTNHATV STKTGDRPLK ELVTDHNWLK NEFIVEVQQR GAAVLRARKQ SSAFSAAGAA CDHIRDWFLG
301: TPKGTWVSMG VCSDGSYGIP PGLVYSFPVI CEKGSWKIVQ GLSIDEFSRE KMDDSARELA EEKDLAYSCL NV

Arabidopsis Description

Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UAN5]
SUBAcon: [endoplasmic reticulum,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.