Factsheet for GSMUA_Achr5P13450_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 2
peroxisome 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P21920_001	Banana	cytosol, endoplasmic reticulum, peroxisome	83.5	77.71
GSMUA_Achr5P03900_001	Banana	plasma membrane	82.85	77.11
Solyc01g090710.2.1	Tomato	cytosol, unclear	83.17	76.95
VIT_15s0021g02410.t01	Wine grape	cytosol	81.88	76.2
KRH19181	Soybean	endoplasmic reticulum	79.29	65.68
PGSC0003DMT400066960	Potato	mitochondrion	68.28	62.43
AT5G56720.1	Thale cress	cytosol, endoplasmic reticulum	73.46	61.02
CDY32764	Canola	endoplasmic reticulum	73.14	60.59
CDY32878	Canola	endoplasmic reticulum, golgi, plasma membrane	73.14	60.59
Bra002797.1-P	Field mustard	endoplasmic reticulum	72.82	60.32
VIT_01s0010g03100.t01	Wine grape	cytosol	9.06	50.0
GSMUA_AchrUn_...	Banana	cytosol	28.48	35.63
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, golgi, peroxisome	38.84	24.64
GSMUA_AchrUn_...	Banana	nucleus, peroxisome, plastid	8.09	18.52

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:1.4.2	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.1.1.3	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016491	GO:GO:0016615
GO:GO:0016616	GO:GO:0019752	GO:GO:0030060	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr5G13450_001	EnsemblPlants:GSMUA_Achr5P13450_001
EnsemblPlants:GSMUA_Achr5T13450_001	InterPro:IPR015955	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C
UniProt:M0SY74	InterPro:Malate_DH_AS	InterPro:Malate_DH_NAD-dep_euk	InterPro:Malate_DH_type2	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056
PFAM:PF02866	PIRSF:PIRSF000102	ScanProsite:PS00068	PANTHER:PTHR23382	PANTHER:PTHR23382:SF7	SUPFAM:SSF51735
SUPFAM:SSF56327	TIGRFAMs:TIGR01758	TIGRFAMs:TIGR01759	UniParc:UPI0002952BC9	SEG:seg	:

Description

Malate dehydrogenase, cytoplasmic [Source:GMGC_GENE;Acc:GSMUA_Achr5G13450_001]

Coordinates

chr5:-:9653774..9656247

Molecular Weight (calculated)

33211.0 Da

IEP (calculated)

6.942

GRAVY (calculated)

0.026

Length

309 amino acids

Sequence
(BLAST)

001: MIARGVMLGS DQPVILHLLD IPPAAEALNG VKMELIDAAF PLLKGVVATT NVEEACGGVN IAIMVGGFRR KEGTERKDVM SKNVSIYKAQ ASALEQYAAA
101: NCKVLVVANP ANTNALILKE FAPSIPAKNI TCLTRLDHNR ALGGIAQRLN IHVSDVKNVI IWGNHSSTQY PDASHATVIT QAGEKSVKEL IADDKWLHDE
201: FISFVQQRGA AIIKARKLSS ALSAASAACD HIHDWVLGTP KGTWTSMGVY SDGSYGVPPG LIYSFPVTCN KGEWSIVQGL RIDEPSRAGM DATAKELIEE
301: KTLAYSFLD

Best Arabidopsis Sequence Match ( AT1G04410.1 )
(BLAST)

001: MAKEPVRVLV TGAAGQIGYA LVPMIARGIM LGADQPVILH MLDIPPAAEA LNGVKMELID AAFPLLKGVV ATTDAVEGCT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQAAALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNISCLTRLD HNRALGQISE RLSVPVSDVK NVIIWGNHSS SQYPDVNHAK
201: VQTSSGEKPV RELVKDDAWL DGEFISTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVL GTPEGTFVSM GVYSDGSYSV PSGLIYSFPV TCRNGDWSIV
301: QGLPIDEVSR KKMDLTAEEL KEEKDLAYSC LS

Arabidopsis Description

MDH1Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178W4H0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.