Factsheet for GSMUA_AchrUn_randomP19660_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, nucleus

Predictor Summary:

nucleus 2
plastid 3
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031899_P002	Maize	plastid	60.74	18.98
EES15165	Sorghum	plastid	60.0	18.88
KRG92120	Soybean	plastid	59.26	18.87
VIT_13s0019g05250.t01	Wine grape	plastid	60.74	18.76
KXG25370	Sorghum	plastid	60.0	18.62
TraesCSU01G135100.2	Wheat	plastid	59.26	18.56
Os08t0562100-01	Rice	plastid	59.26	18.48
TraesCS7D01G283900.1	Wheat	golgi	58.52	18.33
TraesCS7B01G197000.2	Wheat	mitochondrion, plastid	58.52	18.33
HORVU7Hr1G060260.5	Barley	plastid	58.52	18.24
KRH34668	Soybean	plastid	58.52	18.12
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, golgi, peroxisome	65.19	18.07
CDY02811	Canola	plastid	57.04	17.42
Solyc11g007990.1.1	Tomato	plastid	57.04	17.42
CDY32711	Canola	plastid	57.04	17.38
AT5G58330.1	Thale cress	plastid	57.04	17.38
Bra020374.1-P	Field mustard	plastid	57.04	17.38
PGSC0003DMT400079767	Potato	cytosol, plastid	56.3	17.35
CDY58562	Canola	plastid	57.04	17.34
CDX88669	Canola	plastid	57.04	17.34
Bra006772.1-P	Field mustard	plastid	57.04	17.34
HORVU4Hr1G090080.1	Barley	cytosol	45.93	17.13
CDY32993	Canola	plastid	55.56	16.97
Bra002660.1-P	Field mustard	plastid	55.56	16.97
CDY43863	Canola	plastid	55.56	16.93
Solyc03g071590.2.1	Tomato	plastid	54.07	15.63
TraesCS5A01G549900.1	Wheat	cytosol	44.44	15.42
TraesCSU01G127700.1	Wheat	plastid	42.96	14.91
GSMUA_Achr5P03900_001	Banana	plasma membrane	21.48	8.73
GSMUA_Achr4P21920_001	Banana	cytosol, endoplasmic reticulum, peroxisome	21.48	8.73
GSMUA_Achr5P13450_001	Banana	cytosol	18.52	8.09
GSMUA_AchrUn_...	Banana	cytosol	0.0	0.0

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	Gene3D:3.40.50.720	MapMan:50.1.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006108
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0055114
EnsemblPlantsGene:GSMUA_AchrUn_randomG19660_001	EnsemblPlants:GSMUA_AchrUn_randomP19660_001	EnsemblPlants:GSMUA_AchrUn_randomT19660_001	InterPro:Lactate/malate_DH_N	UniProt:M0UAM5	InterPro:Malate_DH_type2
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PANTHER:PTHR23382	PANTHER:PTHR23382:SF0	SUPFAM:SSF51735	UniParc:UPI0002953704

Description

Malate dehydrogenase [NADP], chloroplastic [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG19660_001]

Coordinates

chrchrUn_random:-:94768139..94771026

Molecular Weight (calculated)

14875.9 Da

IEP (calculated)

8.713

GRAVY (calculated)

-0.159

Length

135 amino acids

Sequence
(BLAST)

001: MPRQPSIKAD EQFVSFTYTN TSQVQAPVLP TTPADASSKR ECFGVFCTTY DLKADEKTKS WKTLINIAIS GAAGMISNHL LFKLASGEVF GSDQPIALKL
101: LGSKRSFQAL EGVAMELEDS LYPLLRGFKH WNKSL

Best Arabidopsis Sequence Match ( AT5G58330.1 )
(BLAST)

001: MAMAELSTPK TTSPFLNSSS RLRLSSKLHL SNHFRHLLLP PLHTTTPNSK ISCSVSQNSQ APVAVQENGL VKTKKECYGV FCLTYDLKAE EETRSWKKLI
101: NIAVSGAAGM ISNHLLFKLA SGEVFGPDQP IALKLLGSER SIQALEGVAM ELEDSLFPLL REVDIGTDPN EVFQDVEWAI LIGAKPRGPG MERADLLDIN
201: GQIFAEQGKA LNKAASPNVK VLVVGNPCNT NALICLKNAP NIPAKNFHAL TRLDENRAKC QLALKAGVFY DKVSNMTIWG NHSTTQVPDF LNARINGLPV
301: KEVITDHKWL EEGFTESVQK RGGLLIQKWG RSSAASTAVS IVDAIKSLVT PTPEGDWFST GVYTDGNPYG IEEGLVFSMP CRSKGDGDYE LVKDVEIDDY
401: LRQRIAKSEA ELLAEKRCVA HLTGEGIAYC DLGPVDTMLP GEV

Arabidopsis Description

Malate dehydrogenase [NADP], chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.