Factsheet for Os08t0562100-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

plastid: 17189339
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G135100.2	Wheat	plastid	86.37	86.77
TraesCS7B01G197000.2	Wheat	mitochondrion, plastid	86.14	86.54
HORVU4Hr1G090080.1	Barley	cytosol	71.82	85.91
HORVU7Hr1G060260.5	Barley	plastid	85.68	85.68
Zm00001d031899_P002	Maize	plastid	85.45	85.65
TraesCS7D01G283900.1	Wheat	golgi	84.53	84.92
EES15165	Sorghum	plastid	83.37	84.15
TraesCS5A01G549900.1	Wheat	cytosol	74.36	82.78
KXG25370	Sorghum	plastid	82.91	82.53
TraesCSU01G127700.1	Wheat	plastid	74.13	82.52
GSMUA_AchrUn_...	Banana	cytosol	46.19	80.97
PGSC0003DMT400079767	Potato	cytosol, plastid	78.52	77.63
Solyc11g007990.1.1	Tomato	plastid	78.52	76.92
KRH34668	Soybean	plastid	77.37	76.83
CDY02811	Canola	plastid	78.06	76.47
KRG92120	Soybean	plastid	74.83	76.42
CDY58562	Canola	plastid	78.29	76.35
Bra006772.1-P	Field mustard	plastid	78.29	76.35
CDX88669	Canola	plastid	78.29	76.35
CDY32711	Canola	plastid	77.83	76.07
CDY32993	Canola	plastid	77.6	76.02
Bra002660.1-P	Field mustard	plastid	77.6	76.02
VIT_13s0019g05250.t01	Wine grape	plastid	76.67	75.97
Bra020374.1-P	Field mustard	plastid	77.6	75.85
CDY43863	Canola	plastid	77.6	75.85
AT5G58330.1	Thale cress	plastid	77.14	75.39
Solyc03g071590.2.1	Tomato	plastid	76.21	70.66
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, golgi, peroxisome	78.29	69.61
GSMUA_AchrUn_...	Banana	nucleus, peroxisome, plastid	18.48	59.26
Os04t0551200-01	Rice	mitochondrion, plasma membrane, plastid	32.79	40.34
Os10t0478200-01	Rice	extracellular	30.48	39.76

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00620+1.1.1.82	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37
KEGG:00710+1.1.1.37	KEGG:00710+1.1.1.82	KEGG:00720+1.1.1.37	MapMan:1.2.12	Gene3D:3.40.50.720	Gene3D:3.90.110.10
EntrezGene:4346332	EMBL:AK105935	ProteinID:BAD09610.1	ProteinID:BAD13225.1	ProteinID:BAF24431.1	ProteinID:BAT06713.1
ProteinID:EEE69155.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006107
GO:GO:0006108	GO:GO:0006139	GO:GO:0006734	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0030060
GO:GO:0046554	GO:GO:0055114	InterPro:IPR015955	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C
InterPro:Malate_DH_AS	InterPro:Malate_DH_NADP-dep_pln	InterPro:Malate_DH_type2	InterPro:NAD(P)-bd_dom_sf	EnsemblPlantsGene:Os08g0562100	EnsemblPlants:Os08t0562100-01
PFAM:PF00056	PFAM:PF02866	ScanProsite:PS00068	PANTHER:PTHR23382	PANTHER:PTHR23382:SF0	UniProt:Q6YYW3
SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01757	TIGRFAMs:TIGR01759	UniParc:UPI000023AEA0	RefSeq:XP_015649513.1
SEG:seg	:	:	:	:	:

Description

Similar to Sorghum chloroplast CM3 malate dehydrogenase (NADP) (Fragment). (Os08t0562100-01);Similar to Sorghum chloroplast CM3 malate dehydrogenase (NADP) (Fragment). (Os08t0562100-02)

Coordinates

chr8:+:28141176..28144882

Molecular Weight (calculated)

47011.5 Da

IEP (calculated)

7.339

GRAVY (calculated)

-0.182

Length

433 amino acids

Sequence
(BLAST)

001: MAAIDLSSPA RSSPAPLSPR RGSLHLLLRR PRRPTLRCSL DAAPKQAQAQ GPPAAVAAEE APTARKECYG VFCTTYDLRA DEKTKSWKSL VNVAVSGAAG
101: MISNHLLFKL ASGEVFGPDQ PIALKLLGSE RSIQALEGVA MELEDSLYPL LREVSIGIDP YVVFEDAEWA LLIGAKPRGP GMERSALLDI NGQIFAEQGK
201: ALNSVASRNV KVIVVGNPCN TNALICLKNA PNIPAKNFHA LTRLDENRAK CQLALKAGVF YDKVSNMTIW GNHSTTQVPD FLNAKINGRP VKEVIKDTKW
301: LEDEFTKTVQ KRGGVLIQKW GRSSAASTAV SIVDAIRSLV NPTPEGDWFS TGVYTTGNPY GIAEDIVFSM PCRSKGDGDY ELVKDVAMDD FLWERIKKSE
401: AELLAEKRCV AHLTGEGNAF CDLPGDTMLP GEM

Best Arabidopsis Sequence Match ( AT5G58330.2 )
(BLAST)

001: MAMAELSTPK TTSPFLNSSS RLRLSSKLHL SNHFRHLLLP PLHTTTPNSK ISCSVSQNQA PVAVQENGLV KTKKECYGVF CLTYDLKAEE ETRSWKKLIN
101: IAVSGAAGMI SNHLLFKLAS GEVFGPDQPI ALKLLGSERS IQALEGVAME LEDSLFPLLR EVDIGTDPNE VFQDVEWAIL IGAKPRGPGM ERADLLDING
201: QIFAEQGKAL NKAASPNVKV LVVGNPCNTN ALICLKNAPN IPAKNFHALT RLDENRAKCQ LALKAGVFYD KVSNMTIWGN HSTTQVPDFL NARINGLPVK
301: EVITDHKWLE EGFTESVQKR GGLLIQKWGR SSAASTAVSI VDAIKSLVTP TPEGDWFSTG VYTDGNPYGI EEGLVFSMPC RSKGDGDYEL VKDVEIDDYL
401: RQRIAKSEAE LLAEKRCVAH LTGEGIAYCD LGPVDTMLPG EV

Arabidopsis Description

Malate dehydrogenase [NADP], chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.