Factsheet for Zm00001d031899_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
extracellular: 22192489
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 22192489 doi

K Witzel, M Shahzad, A Matros, HP Mock, KH Mühling

Institute of Plant Nutrition and Soil Science, Christian Albrechts University, Hermann-Rodewald-Strasse 2, 24118 Kiel, Germany. khmuehling@plantnutrition.uni-kiel.de.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d038652_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58330.1	Zm00001d038652_P003	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES15165	Sorghum	plastid	92.59	93.24
KXG25370	Sorghum	plastid	92.82	92.18
Os08t0562100-01	Rice	plastid	85.65	85.45
HORVU4Hr1G090080.1	Barley	cytosol	71.06	84.81
TraesCSU01G135100.2	Wheat	plastid	84.49	84.69
TraesCS7B01G197000.2	Wheat	mitochondrion, plastid	83.8	83.99
TraesCS7D01G283900.1	Wheat	golgi	82.87	83.06
HORVU7Hr1G060260.5	Barley	plastid	83.1	82.91
TraesCS5A01G549900.1	Wheat	cytosol	73.15	81.23
TraesCSU01G127700.1	Wheat	plastid	72.92	80.98
GSMUA_AchrUn_...	Banana	cytosol	46.3	80.97
VIT_13s0019g05250.t01	Wine grape	plastid	78.47	77.57
PGSC0003DMT400079767	Potato	cytosol, plastid	78.24	77.17
Solyc11g007990.1.1	Tomato	plastid	78.24	76.47
CDY58562	Canola	plastid	78.47	76.35
CDX88669	Canola	plastid	78.47	76.35
Bra006772.1-P	Field mustard	plastid	78.47	76.35
CDY32993	Canola	plastid	77.78	76.02
CDY02811	Canola	plastid	77.78	76.02
KRH34668	Soybean	plastid	76.62	75.92
Bra002660.1-P	Field mustard	plastid	77.55	75.79
CDY32711	Canola	plastid	77.55	75.62
KRG92120	Soybean	plastid	74.07	75.47
CDY43863	Canola	plastid	77.31	75.39
Bra020374.1-P	Field mustard	plastid	77.31	75.39
AT5G58330.1	Thale cress	plastid	76.39	74.49
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, golgi, peroxisome	79.17	70.23
Solyc03g071590.2.1	Tomato	plastid	75.23	69.59
GSMUA_AchrUn_...	Banana	nucleus, peroxisome, plastid	18.98	60.74
Zm00001d014030_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	30.09	41.67
Zm00001d032695_P001	Maize	plasma membrane	31.48	40.96
Zm00001d002741_P001	Maize	mitochondrion, peroxisome, plastid, vacuole	30.32	33.59
Zm00001d019330_P001	Maize	cytosol	29.17	33.25

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00620+1.1.1.82	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37
KEGG:00710+1.1.1.37	KEGG:00710+1.1.1.82	KEGG:00720+1.1.1.37	MapMan:1.2.12	Gene3D:3.40.50.720	Gene3D:3.90.110.10
EMBL:BT067182	UniProt:C0PFW3	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016491
GO:GO:0016615	GO:GO:0016616	GO:GO:0019752	GO:GO:0030060	GO:GO:0046554	GO:GO:0055114
InterPro:IPR015955	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS	InterPro:Malate_DH_NADP-dep_pln
InterPro:Malate_DH_type2	InterPro:NAD(P)-bd_dom_sf	ProteinID:ONM03918.1	PFAM:PF00056	PFAM:PF02866	ScanProsite:PS00068
PANTHER:PTHR23382	PANTHER:PTHR23382:SF0	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01757	TIGRFAMs:TIGR01759
UniParc:UPI000189DA50	EnsemblPlantsGene:Zm00001d031899	EnsemblPlants:Zm00001d031899_P002	EnsemblPlants:Zm00001d031899_T002	SEG:seg	:

Description

malate dehydrogenase6 malate dehydrogenase6

Coordinates

chr1:-:205992187..205996030

Molecular Weight (calculated)

46789.1 Da

IEP (calculated)

6.874

GRAVY (calculated)

-0.124

Length

432 amino acids

Sequence
(BLAST)

001: MGLSTVYSPA GPRLVPAPLG RCRSAQPRRP RRAPLATVRC SVDATKQAQD GVATAVATEA PASRKECFGV FCTTYDLKAE DKTKSWKKLV NVAVSGAAGM
101: ISNHLLFKLA SGEVFGQDQP IALKLLGSER SFQALEGVAM ELEDSLYPLL REVSIGIDPY VVFQDVDWAL LIGAKPRGPG MERAALLDIN GQIFADQGKA
201: LNAVASRNAK VLVVGNPCNT NALICLKNAP NIPAKNFHAL TRLDENRAKC QLALKAGVFY DKVSNVTIWG NHSTTQVPDF LNAKIDGRPV KEVIKDTKWL
301: EEEFTLTVQK RGGVLIQKWG RSSAASTAVS IVDAIRSLVT PTPEGDWFST GVYTTGNPYG IAEDIVFSMP CRSKGDGDYE LASDVLMDDF LWERIKKSEA
401: ELLAEKKCVA HLTGEGNAFC DLPEDTMLPG EV

Best Arabidopsis Sequence Match ( AT5G58330.1 )
(BLAST)

001: MAMAELSTPK TTSPFLNSSS RLRLSSKLHL SNHFRHLLLP PLHTTTPNSK ISCSVSQNSQ APVAVQENGL VKTKKECYGV FCLTYDLKAE EETRSWKKLI
101: NIAVSGAAGM ISNHLLFKLA SGEVFGPDQP IALKLLGSER SIQALEGVAM ELEDSLFPLL REVDIGTDPN EVFQDVEWAI LIGAKPRGPG MERADLLDIN
201: GQIFAEQGKA LNKAASPNVK VLVVGNPCNT NALICLKNAP NIPAKNFHAL TRLDENRAKC QLALKAGVFY DKVSNMTIWG NHSTTQVPDF LNARINGLPV
301: KEVITDHKWL EEGFTESVQK RGGLLIQKWG RSSAASTAVS IVDAIKSLVT PTPEGDWFST GVYTDGNPYG IEEGLVFSMP CRSKGDGDYE LVKDVEIDDY
401: LRQRIAKSEA ELLAEKRCVA HLTGEGIAYC DLGPVDTMLP GEV

Arabidopsis Description

Malate dehydrogenase [NADP], chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.