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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • peroxisome 2
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:mitochondrion, peroxisome, secretory
iPSORT:secretory
MultiLoc:peroxisome
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:peroxisome
 extracellular: 16377746
plasma membrane: 18521681
extracellular: 20408568
plastid: 22065420
extracellular: 22192489
plastid: 23198870
plasma membrane: 23353019
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663
cytosol: 28250383
msms PMID: 28250383 doi
CN Meisrimler, F Buck, S Lüthje
University Hospital Eppendorf, Institute of Clinical Chemistry, Campus Science, Martinistraße 52, D-20246 Hamburg, Germany. buck@uke.de., University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Oxidative Stress and Plant Proteomics Group, Ohnhorststraße 18, D-22609 Hamburg, Germany. c_m_2406@yahoo.de., University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Oxidative Stress and Plant Proteomics Group, Ohnhorststraße 18, D-22609 Hamburg, Germany. s.luthje@botanik.uni-hamburg.de.
msms PMID: 23353019 doi
D Hopff, S Wienkoop, S Lüthje
University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.
msms PMID: 27297264 doi
D Dahal, KJ Newton, BP Mooney
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID: 16377746 doi
J Zhu, S Chen, S Alvarez, VS Asirvatham, DP Schachtman, Y Wu, RE Sharp
Division of Plant Sciences, University of Missouri, Columbia, Missouri 65211, USA.
msms PMID: 22192489 doi
K Witzel, M Shahzad, A Matros, HP Mock, KH Mühling
Institute of Plant Nutrition and Soil Science, Christian Albrechts University, Hermann-Rodewald-Strasse 2, 24118 Kiel, Germany. khmuehling@plantnutrition.uni-kiel.de.
msms PMID: 23198870 doi
M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.
msms PMID: 18521681 doi
P Carletti, A Masi, B Spolaore, P Polverino De Laureto, M De Zorzi, L Turetta, M Ferretti, S Nardi
Department of Agricultural Biotechnology, University of Padua, Agripolis, Strada Romea, 16-35020 Legnaro, Padova, Italy.
msms PMID: 27341663 doi
P Voothuluru, JC Anderson, RE Sharp, SC Peck
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
msms PMID: 20408568 doi
W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li
Department of Plant Nutrition, China Agricultural University, Beijing, PR China.
msms PMID: 22065420 doi
W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.
msms PMID: 23508561 doi
Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck
Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d038652_P003

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G04410.1 Zm00001d038652_P003 AT5G42980.1 15352244
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EER94077 Sorghum peroxisome 97.59 97.59
Zm00001d014030_P001 Maize cytosol, endoplasmic reticulum, peroxisome 89.46 95.19
Os10t0478200-01 Rice extracellular 94.28 94.28
TraesCS1D01G153900.1 Wheat golgi, plastid 93.98 93.69
HORVU1Hr1G041250.5 Barley extracellular 93.98 93.69
CDX98109 Canola cytosol, endoplasmic reticulum, peroxisome 61.45 93.15
TraesCS1B01G172400.1 Wheat golgi 93.37 93.09
Solyc09g090140.2.1 Tomato plastid 92.47 92.47
VIT_07s0005g03360.t01 Wine grape extracellular 92.17 92.17
PGSC0003DMT400044217 Potato cytosol 92.17 92.17
CDY43609 Canola peroxisome 91.87 91.87
TraesCS1A01G155200.1 Wheat endoplasmic reticulum 90.66 91.77
AT5G43330.1 Thale cress cytosol, endoplasmic reticulum, peroxisome 91.57 91.57
Bra027485.1-P Field mustard peroxisome 91.57 91.57
CDY32953 Canola peroxisome 91.57 91.57
CDY15504 Canola cytosol, endoplasmic reticulum, peroxisome 91.57 91.57
GSMUA_Achr4P21920_001 Banana cytosol, endoplasmic reticulum, peroxisome 91.27 91.27
CDY67454 Canola cytosol, endoplasmic reticulum, peroxisome 91.27 91.27
CDX89826 Canola peroxisome 91.27 91.27
GSMUA_Achr5P03900_001 Banana plasma membrane 90.96 90.96
AT1G04410.1 Thale cress peroxisome 90.96 90.96
Bra030569.1-P Field mustard cytosol, golgi, peroxisome 90.96 90.96
CDY18230 Canola peroxisome 90.96 90.96
KRH31702 Soybean endoplasmic reticulum 89.46 90.55
KRH69119 Soybean mitochondrion, nucleus 90.06 90.06
Bra015314.1-P Field mustard peroxisome 90.06 90.06
VIT_07s0005g03350.t01 Wine grape plastid 92.17 83.84
Zm00001d019330_P001 Maize cytosol 63.55 55.67
Zm00001d002741_P001 Maize mitochondrion, peroxisome, plastid, vacuole 64.76 55.13
Zm00001d031899_P002 Maize plastid 40.96 31.48
Protein Annotations
KEGG:00020+1.1.1.37KEGG:00270+1.1.1.37KEGG:00620+1.1.1.37KEGG:00630+1.1.1.37KEGG:00680+1.1.1.37KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37MapMan:1.4.2Gene3D:3.40.50.720Gene3D:3.90.110.10MapMan:5.1.1.3EntrezGene:542598
UniProt:A0A1R3MB28EMBL:AF007581EMBL:BT084116EMBL:EU625276GO:GO:0003674GO:GO:0003824
GO:GO:0005575GO:GO:0005623GO:GO:0005886GO:GO:0005975GO:GO:0006091GO:GO:0006099
GO:GO:0006108GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016020GO:GO:0016491
GO:GO:0016615GO:GO:0016616GO:GO:0019752GO:GO:0030060GO:GO:0055114InterPro:IPR015955
InterPro:L-lactate/malate_DHInterPro:Lactate/malate_DH_CInterPro:Lactate/malate_DH_NInterPro:Lactate_DH/Glyco_Ohase_4_CEMBL:M95069InterPro:Malate_DH_AS
InterPro:Malate_DH_NAD-dep_eukInterPro:Malate_DH_type2InterPro:NAD(P)-bd_dom_sfProteinID:ONM05777.1PFAM:PF00056PFAM:PF02866
PIRSF:PIRSF000102ScanProsite:PS00068PANTHER:PTHR23382PANTHER:PTHR23382:SF7UniProt:Q08062SUPFAM:SSF51735
SUPFAM:SSF56327TIGRFAMs:TIGR01758TIGRFAMs:TIGR01759UniParc:UPI000012EE10EnsemblPlantsGene:Zm00001d032695EnsemblPlants:Zm00001d032695_P001
EnsemblPlants:Zm00001d032695_T001SEG:seg::::
Description
malate dehydrogenase4Malate dehydrogenase%2C cytoplasmic
Coordinates
chr1:-:234902658..234908089
Molecular Weight (calculated)
35591.9 Da
IEP (calculated)
5.977
GRAVY (calculated)
0.024
Length
332 amino acids
Sequence
(BLAST)
001: MAKEPMRVLV TGAAGQIGYA LVPMIARGVM LGADQPVILH MLDIPPAAEA LNGVKMELVD AAFPLLKGVV ATTDVVEACT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQASALEAH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNVTCLTRLD HNRALGQISE RLNVQVSDVK NVIIWGNHSS SQYPDVNHAT
201: VKTSTGEKPV RELVSDDEWL NGEFITTVQQ RGAAIIKARK FSSALSAASS ACDHIRDWVL GTPEGTFVSM GVYSDGSYGV PSGLIYSFPV TCSGGEWKIV
301: QGLPIDEFSR KKMDATAQEL TEEKTLAYSC LE
Best Arabidopsis Sequence Match ( AT5G43330.1 )
(BLAST)
001: MAKEPVRVLV TGAAGQIGYA LVPMIARGIM LGADQPVILH MLDIPFAAEA LNGVKMELVD AAFPLLKGVV ATTDAVEACT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQASALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNITCLTRLD HNRALGQVSE RLSVPVSDVK NVIIWGNHSS TQYPDVNHAT
201: VKTSVGEKPV RELVKNDEWL NGEFISTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVV GTPEGTFVSM GVYSDGSYNV PAGLIYSFPV TCRNGEWTIV
301: QGLPIDDASR KKMDLTAEEL KEEKDLAYSC LS
Arabidopsis Description
MDH2Malate dehydrogenase 2, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:P57106]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.