Factsheet for GSMUA_Achr4P21920_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome

Predictor Summary:

extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 2
plastid 2
peroxisome 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	peroxisome
Plant-mPloc:	mitochondrion, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P03900_001	Banana	plasma membrane	95.78	95.78
VIT_07s0005g03360.t01	Wine grape	extracellular	93.07	93.07
Solyc09g090140.2.1	Tomato	plastid	92.77	92.77
KRH31702	Soybean	endoplasmic reticulum	91.57	92.68
PGSC0003DMT400044217	Potato	cytosol	92.47	92.47
KRH69119	Soybean	mitochondrion, nucleus	92.17	92.17
EER94077	Sorghum	peroxisome	91.87	91.87
Zm00001d032695_P001	Maize	plasma membrane	91.27	91.27
CDX98109	Canola	cytosol, endoplasmic reticulum, peroxisome	59.94	90.87
CDY43609	Canola	peroxisome	90.66	90.66
AT5G43330.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	90.36	90.36
Os10t0478200-01	Rice	extracellular	90.36	90.36
CDY32953	Canola	peroxisome	90.36	90.36
Bra027485.1-P	Field mustard	peroxisome	90.36	90.36
HORVU1Hr1G041250.5	Barley	extracellular	90.06	89.79
CDY15504	Canola	cytosol, endoplasmic reticulum, peroxisome	89.76	89.76
TraesCS1D01G153900.1	Wheat	golgi, plastid	89.76	89.49
TraesCS1B01G172400.1	Wheat	golgi	89.76	89.49
CDY18230	Canola	peroxisome	89.16	89.16
AT1G04410.1	Thale cress	peroxisome	88.86	88.86
CDY67454	Canola	cytosol, endoplasmic reticulum, peroxisome	88.86	88.86
Bra030569.1-P	Field mustard	cytosol, golgi, peroxisome	88.86	88.86
CDX89826	Canola	peroxisome	88.86	88.86
Zm00001d014030_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	83.43	88.78
TraesCS1A01G155200.1	Wheat	endoplasmic reticulum	87.65	88.72
Bra015314.1-P	Field mustard	peroxisome	87.65	87.65
VIT_07s0005g03350.t01	Wine grape	plastid	93.07	84.66
GSMUA_Achr5P13450_001	Banana	cytosol	77.71	83.5
GSMUA_AchrUn_...	Banana	cytosol	27.71	37.25
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, golgi, peroxisome	40.06	27.31
GSMUA_AchrUn_...	Banana	nucleus, peroxisome, plastid	8.73	21.48

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:1.4.2	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.1.1.3	GO:GO:0003674
GO:GO:0003824	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0019752
GO:GO:0030060	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr4G21920_001	EnsemblPlants:GSMUA_Achr4P21920_001	EnsemblPlants:GSMUA_Achr4T21920_001	InterPro:IPR015955
InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	UniProt:M0SR05	InterPro:Malate_DH_AS
InterPro:Malate_DH_NAD-dep_euk	InterPro:Malate_DH_type2	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102
ScanProsite:PS00068	PANTHER:PTHR23382	PANTHER:PTHR23382:SF7	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01758
TIGRFAMs:TIGR01759	UniParc:UPI0002968FC0	SEG:seg	:	:	:

Description

Malate dehydrogenase, cytoplasmic [Source:GMGC_GENE;Acc:GSMUA_Achr4G21920_001]

Coordinates

chr4:-:22306393..22310872

Molecular Weight (calculated)

35496.8 Da

IEP (calculated)

6.361

GRAVY (calculated)

0.062

Length

332 amino acids

Sequence
(BLAST)

001: MAKDPVRVLV TGAAGQIGYA LVPMIARGVM LGPDQPVILH MLDIPPAAEA LNGVRMELVD AAFPLLKGVV ATTDAVEACT GVNIAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQASALEAY AAPNCKVLVV ANPANTNALI LKEFAPSIPA KNITCLTRLD HNRALGQISE RLNVQVSDVK NVIIWGNHSS TQYPDVSHAT
201: VKTPSGEKPV RQLVSDDDWL KGEFITTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVL GTPEGTWVSM GVYSDGSYNV PAGLIYSFPV TCNAGEWTIV
301: QGLSIDEFSR KKLDATAEEL SEEKALAYSC LS

Best Arabidopsis Sequence Match ( AT5G43330.1 )
(BLAST)

001: MAKEPVRVLV TGAAGQIGYA LVPMIARGIM LGADQPVILH MLDIPFAAEA LNGVKMELVD AAFPLLKGVV ATTDAVEACT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQASALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNITCLTRLD HNRALGQVSE RLSVPVSDVK NVIIWGNHSS TQYPDVNHAT
201: VKTSVGEKPV RELVKNDEWL NGEFISTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVV GTPEGTFVSM GVYSDGSYNV PAGLIYSFPV TCRNGEWTIV
301: QGLPIDDASR KKMDLTAEEL KEEKDLAYSC LS

Arabidopsis Description

MDH2Malate dehydrogenase 2, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:P57106]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.