Factsheet for PGSC0003DMT400044217

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	peroxisome
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g090140.2.1	Tomato	plastid	99.1	99.1
CDX98109	Canola	cytosol, endoplasmic reticulum, peroxisome	62.05	94.06
Bra027485.1-P	Field mustard	peroxisome	93.67	93.67
CDY32953	Canola	peroxisome	93.67	93.67
CDY43609	Canola	peroxisome	93.67	93.67
KRH69119	Soybean	mitochondrion, nucleus	93.67	93.67
KRH31702	Soybean	endoplasmic reticulum	92.47	93.6
EER94077	Sorghum	peroxisome	93.37	93.37
AT5G43330.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	93.07	93.07
CDY18230	Canola	peroxisome	93.07	93.07
AT1G04410.1	Thale cress	peroxisome	92.77	92.77
VIT_07s0005g03360.t01	Wine grape	extracellular	92.77	92.77
CDX89826	Canola	peroxisome	92.77	92.77
GSMUA_Achr4P21920_001	Banana	cytosol, endoplasmic reticulum, peroxisome	92.47	92.47
Zm00001d032695_P001	Maize	plasma membrane	92.17	92.17
CDY15504	Canola	cytosol, endoplasmic reticulum, peroxisome	92.17	92.17
GSMUA_Achr5P03900_001	Banana	plasma membrane	91.57	91.57
CDY67454	Canola	cytosol, endoplasmic reticulum, peroxisome	91.57	91.57
Os10t0478200-01	Rice	extracellular	91.57	91.57
Bra030569.1-P	Field mustard	cytosol, golgi, peroxisome	91.57	91.57
Bra015314.1-P	Field mustard	peroxisome	91.57	91.57
HORVU1Hr1G041250.5	Barley	extracellular	90.96	90.69
TraesCS1B01G172400.1	Wheat	golgi	90.96	90.69
TraesCS1D01G153900.1	Wheat	golgi, plastid	90.96	90.69
Zm00001d014030_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	84.64	90.06
TraesCS1A01G155200.1	Wheat	endoplasmic reticulum	88.86	89.94
VIT_07s0005g03350.t01	Wine grape	plastid	92.77	84.38
PGSC0003DMT400066960	Potato	mitochondrion	72.89	71.6
PGSC0003DMT400079767	Potato	cytosol, plastid	39.76	30.14

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:1.4.2	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.1.1.3	ProteinID:ABC01890
ProteinID:ABC01890.1	EMBL:DQ294258	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0006091
GO:GO:0006099	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0016615	GO:GO:0016616	GO:GO:0019752	GO:GO:0030060	GO:GO:0055114	InterPro:IPR015955
InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	UniProt:M1BFT7	InterPro:Malate_DH_AS
InterPro:Malate_DH_NAD-dep_euk	InterPro:Malate_DH_type2	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	EnsemblPlantsGene:PGSC0003DMG400017170
PGSC:PGSC0003DMG400017170	EnsemblPlants:PGSC0003DMT400044217	PIRSF:PIRSF000102	ScanProsite:PS00068	PANTHER:PTHR23382	PANTHER:PTHR23382:SF7
SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01758	TIGRFAMs:TIGR01759	UniParc:UPI000296B564	SEG:seg

Description

Malate dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400017170]

Coordinates

chr9:-:56447068..56450431

Molecular Weight (calculated)

35429.7 Da

IEP (calculated)

6.251

GRAVY (calculated)

0.080

Length

332 amino acids

Sequence
(BLAST)

001: MAKDPVRVLV TGAAGQIGYA LVPMIARGVM LGADQPVILH MLDIPPAAEA LNGVKMELVD AAFPLLKGVV ATTDAVEACT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQASALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNITCLTRLD HNRALGQISE RLSVQVSDVK NVIIWGNHSS SQYPDVNHAT
201: VATPAGDKPV RELVADDAWL NSEFISTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVL GTPEGTFVSM GVYSDGSYNV PAGLIYSFPV TCKNGEWSIV
301: QGLPIDEFSR KKLDLTAEEL SEEKALAYSC LT

Best Arabidopsis Sequence Match ( AT1G04410.1 )
(BLAST)

001: MAKEPVRVLV TGAAGQIGYA LVPMIARGIM LGADQPVILH MLDIPPAAEA LNGVKMELID AAFPLLKGVV ATTDAVEGCT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQAAALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNISCLTRLD HNRALGQISE RLSVPVSDVK NVIIWGNHSS SQYPDVNHAK
201: VQTSSGEKPV RELVKDDAWL DGEFISTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVL GTPEGTFVSM GVYSDGSYSV PSGLIYSFPV TCRNGDWSIV
301: QGLPIDEVSR KKMDLTAEEL KEEKDLAYSC LS

Arabidopsis Description

MDH1Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178W4H0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.