Factsheet for VIT_07s0005g03350.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
plastid 6
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0005g03360.t01	Wine grape	extracellular	90.96	100.0
KRH31702	Soybean	endoplasmic reticulum	84.66	94.21
KRH69119	Soybean	mitochondrion, nucleus	85.48	93.98
Solyc09g090140.2.1	Tomato	plastid	84.66	93.07
GSMUA_Achr4P21920_001	Banana	cytosol, endoplasmic reticulum, peroxisome	84.66	93.07
PGSC0003DMT400044217	Potato	cytosol	84.38	92.77
EER94077	Sorghum	peroxisome	84.11	92.47
Zm00001d032695_P001	Maize	plasma membrane	83.84	92.17
CDX98109	Canola	cytosol, endoplasmic reticulum, peroxisome	54.79	91.32
AT5G43330.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	83.01	91.27
GSMUA_Achr5P03900_001	Banana	plasma membrane	83.01	91.27
CDY43609	Canola	peroxisome	82.74	90.96
CDY32953	Canola	peroxisome	82.47	90.66
Os10t0478200-01	Rice	extracellular	82.47	90.66
Bra027485.1-P	Field mustard	peroxisome	82.47	90.66
HORVU1Hr1G041250.5	Barley	extracellular	82.19	90.09
TraesCS1D01G153900.1	Wheat	golgi, plastid	82.19	90.09
TraesCS1B01G172400.1	Wheat	golgi	82.19	90.09
CDY18230	Canola	peroxisome	81.92	90.06
CDY15504	Canola	cytosol, endoplasmic reticulum, peroxisome	81.92	90.06
AT1G04410.1	Thale cress	peroxisome	81.64	89.76
CDY67454	Canola	cytosol, endoplasmic reticulum, peroxisome	81.64	89.76
CDX89826	Canola	peroxisome	81.64	89.76
Zm00001d014030_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	76.71	89.74
Bra030569.1-P	Field mustard	cytosol, golgi, peroxisome	81.37	89.46
TraesCS1A01G155200.1	Wheat	endoplasmic reticulum	80.0	89.02
Bra015314.1-P	Field mustard	peroxisome	80.55	88.55
VIT_15s0021g02410.t01	Wine grape	cytosol	76.71	84.34
VIT_01s0010g03100.t01	Wine grape	cytosol	10.41	67.86
VIT_01s0010g03090.t01	Wine grape	plastid	23.56	59.72
VIT_13s0019g05250.t01	Wine grape	plastid	37.53	31.35

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:1.4.2	EntrezGene:100248145	wikigene:100248145	EntrezGene:100253273	wikigene:100253273
Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.1.1.3	ProteinID:CBI37115	ProteinID:CBI37115.3	ProteinID:CCB60115
ProteinID:CCB60115.1	UniProt:F6HZK0	EMBL:FN596502	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099
GO:GO:0006107	GO:GO:0006108	GO:GO:0006139	GO:GO:0006734	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0019752	GO:GO:0030060
GO:GO:0055114	InterPro:IPR015955	InterPro:L-lactate/malate_DH	EntrezGene:LOC100248145	wikigene:LOC100248145	EntrezGene:LOC100253273
wikigene:LOC100253273	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS	InterPro:Malate_DH_NAD-dep_euk
InterPro:Malate_DH_type2	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102	ScanProsite:PS00068
PANTHER:PTHR23382	PANTHER:PTHR23382:SF7	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGR:TC56247	TIGR:TC57431
TIGRFAMs:TIGR01758	TIGRFAMs:TIGR01759	UniParc:UPI000210A550	ArrayExpress:VIT_07s0005g03350	EnsemblPlantsGene:VIT_07s0005g03350	EnsemblPlants:VIT_07s0005g03350.t01
unigene:Vvi.25537	unigene:Vvi.9358	RefSeq:XP_002278712	RefSeq:XP_002278712.1	SEG:seg	:

Description

Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:F6HZK0]

Coordinates

chr7:-:6219886..6224219

Molecular Weight (calculated)

38976.1 Da

IEP (calculated)

7.126

GRAVY (calculated)

0.018

Length

365 amino acids

Sequence
(BLAST)

001: MAEDVPRGQT SGLTKSSGTQ RRFPLPCSPA IPTMAKEPVR VLVTGAAGQI GYALVPMIAR GVMLGADQPV ILHMLDIPPA AEALNGVKME LVDAAFPLLK
101: GVVATTDVVE ACTGVNIAVM VGGFPRKEGM ERKDVMSKNV SIYKSQASAL ENHAAANCKV LVVANPANTN ALILKEFAPS IPEKNISCLT RLDHNRALGQ
201: VSERLNVQVS DVKNVIIWGN HSSTQYPDVN HATVKTPAGE KPVRGLVGDD AWLNGEFITT VQQRGAAIIK ARKLSSALSA ASAACDHIRD WVLGTPEGTW
301: VSMGVYSDGS YNVPAGLIYS FPVTCCAGEW KIVQGLHIDE FSRKKLDLTA QELSEEKELA YSCLS

Best Arabidopsis Sequence Match ( AT5G43330.1 )
(BLAST)

001: MAKEPVRVLV TGAAGQIGYA LVPMIARGIM LGADQPVILH MLDIPFAAEA LNGVKMELVD AAFPLLKGVV ATTDAVEACT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQASALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNITCLTRLD HNRALGQVSE RLSVPVSDVK NVIIWGNHSS TQYPDVNHAT
201: VKTSVGEKPV RELVKNDEWL NGEFISTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVV GTPEGTFVSM GVYSDGSYNV PAGLIYSFPV TCRNGEWTIV
301: QGLPIDDASR KKMDLTAEEL KEEKDLAYSC LS

Arabidopsis Description

MDH2Malate dehydrogenase 2, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:P57106]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.