Factsheet for VIT_01s0010g03090.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0005g03360.t01	Wine grape	extracellular	59.72	25.9
VIT_15s0021g02410.t01	Wine grape	cytosol	55.56	24.1
VIT_07s0005g03350.t01	Wine grape	plastid	59.72	23.56
VIT_13s0019g05250.t01	Wine grape	plastid	29.17	9.61
VIT_01s0010g03100.t01	Wine grape	cytosol	1.39	3.57

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	Gene3D:3.40.50.720	MapMan:50.1.1	ProteinID:CCB51272	ProteinID:CCB51272.1	UniProt:F6HG79
EMBL:FN595754	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0006099	GO:GO:0006107	GO:GO:0006108	GO:GO:0006139
GO:GO:0006734	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016615
GO:GO:0030060	GO:GO:0055114	InterPro:Lactate/malate_DH_N	InterPro:Malate_DH_type2	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056
PANTHER:PTHR23382	PANTHER:PTHR23382:SF7	SUPFAM:SSF51735	UniParc:UPI000210A152	ArrayExpress:VIT_01s0010g03090	EnsemblPlantsGene:VIT_01s0010g03090
EnsemblPlants:VIT_01s0010g03090.t01	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:20143700..20144271

Molecular Weight (calculated)

15875.0 Da

IEP (calculated)

7.025

GRAVY (calculated)

-0.143

Length

144 amino acids

Sequence
(BLAST)

001: MVDLQASFCL PSSPYDSCND QRTSSHPHYW SRETNWPVIL HMLNIPPTEE ALNGVKMELL DSAFPLLKGV VTTTDWGQYC YHGGGFLRKE GMERKSVMSK
101: NVSTYQSQAS ALENHAAANC KVLVVANPAN AIAFILKGFA PLIS

Best Arabidopsis Sequence Match ( AT1G04410.1 )
(BLAST)

001: MAKEPVRVLV TGAAGQIGYA LVPMIARGIM LGADQPVILH MLDIPPAAEA LNGVKMELID AAFPLLKGVV ATTDAVEGCT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQAAALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNISCLTRLD HNRALGQISE RLSVPVSDVK NVIIWGNHSS SQYPDVNHAK
201: VQTSSGEKPV RELVKDDAWL DGEFISTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVL GTPEGTFVSM GVYSDGSYSV PSGLIYSFPV TCRNGDWSIV
301: QGLPIDEVSR KKMDLTAEEL KEEKDLAYSC LS

Arabidopsis Description

MDH1Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178W4H0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.