Factsheet for VIT_13s0019g05250.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079767	Potato	cytosol, plastid	82.38	82.19
KRH34668	Soybean	plastid	81.69	81.88
KRG92120	Soybean	plastid	79.41	81.84
Solyc11g007990.1.1	Tomato	plastid	82.61	81.67
GSMUA_AchrUn_...	Banana	cytosol	46.0	81.38
HORVU4Hr1G090080.1	Barley	cytosol	67.05	80.94
Zm00001d031899_P002	Maize	plastid	77.57	78.47
AT5G58330.1	Thale cress	plastid	79.41	78.33
Bra002660.1-P	Field mustard	plastid	79.18	78.28
CDY02811	Canola	plastid	79.18	78.28
CDY43863	Canola	plastid	79.18	78.1
CDY32993	Canola	plastid	78.95	78.05
CDY58562	Canola	plastid	79.18	77.93
Bra006772.1-P	Field mustard	plastid	79.18	77.93
CDX88669	Canola	plastid	79.18	77.93
CDY32711	Canola	plastid	78.95	77.88
Bra020374.1-P	Field mustard	plastid	78.95	77.88
EES15165	Sorghum	plastid	76.2	77.62
KXG25370	Sorghum	plastid	76.89	77.24
Os08t0562100-01	Rice	plastid	75.97	76.67
TraesCS7D01G283900.1	Wheat	golgi	75.51	76.57
TraesCS7B01G197000.2	Wheat	mitochondrion, plastid	74.83	75.87
TraesCSU01G135100.2	Wheat	plastid	74.83	75.87
TraesCS5A01G549900.1	Wheat	cytosol	66.82	75.06
HORVU7Hr1G060260.5	Barley	plastid	73.91	74.6
TraesCSU01G127700.1	Wheat	plastid	65.9	74.04
Solyc03g071590.2.1	Tomato	plastid	75.74	70.88
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, golgi, peroxisome	78.49	70.43
GSMUA_AchrUn_...	Banana	nucleus, peroxisome, plastid	18.76	60.74
VIT_15s0021g02410.t01	Wine grape	cytosol	32.27	42.47
VIT_07s0005g03360.t01	Wine grape	extracellular	30.89	40.66
VIT_07s0005g03350.t01	Wine grape	plastid	31.35	37.53
VIT_01s0010g03100.t01	Wine grape	cytosol	4.81	37.5
VIT_01s0010g03090.t01	Wine grape	plastid	9.61	29.17

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00620+1.1.1.82	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37
KEGG:00710+1.1.1.37	KEGG:00710+1.1.1.82	KEGG:00720+1.1.1.37	MapMan:1.2.12	EntrezGene:100247974	wikigene:100247974
Gene3D:3.40.50.720	Gene3D:3.90.110.10	EMBL:AM466875	ProteinID:CAN70407	ProteinID:CAN70407.1	ProteinID:CBI31387
ProteinID:CBI31387.3	UniProt:D7TM20	EMBL:FN595998	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005975	GO:GO:0006091
GO:GO:0006099	GO:GO:0006107	GO:GO:0006108	GO:GO:0006139	GO:GO:0006734	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016491	GO:GO:0016615
GO:GO:0016616	GO:GO:0030060	GO:GO:0046554	GO:GO:0055114	InterPro:IPR015955	EntrezGene:LOC100247974
wikigene:LOC100247974	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS	InterPro:Malate_DH_NADP-dep_pln
InterPro:Malate_DH_type2	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	ScanProsite:PS00068	PANTHER:PTHR23382
PANTHER:PTHR23382:SF0	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGR:TC55259	TIGRFAMs:TIGR01757	TIGRFAMs:TIGR01759
UniParc:UPI0001984807	ArrayExpress:VIT_13s0019g05250	EnsemblPlantsGene:VIT_13s0019g05250	EnsemblPlants:VIT_13s0019g05250.t01	unigene:Vvi.1238	RefSeq:XP_002265080
RefSeq:XP_002265080.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr13:-:7065103..7070875

Molecular Weight (calculated)

48065.8 Da

IEP (calculated)

6.599

GRAVY (calculated)

-0.115

Length

437 amino acids

Sequence
(BLAST)

001: MALAYLSPSY ANTQLHLHSS QLSFLSTHLS FHRRHSLRPL PRTRNARISC SVASNEAPVA VQAQDQKIKP ECFGVFCTTY DLKAEEETKS WKKLINIAVS
101: GAAGMISNHL LFKLAAGEVF GPDQPIAFKL LGSERSFQAL EGVAMELEDS LFPLLREVSI GIDPYEVFQD VEWALLIGAK PRGPGMERAD LLDINGQIFA
201: EQGKALNAVA SRNVKVMVVG NPCNTNALIC MKNAPNIPAK NFHALTRLDE NRAKCQLALK AGVFYDKVSN VTIWGNHSTT QVPDFLNARI NGLPVKEVIK
301: DIKWLEEEFT EKVQKRGGVL IQKWGRSSAA STAVSIVDAM KSLVTPTPEG DWFSSGVYTT GNPYGVAEGI VFSMPCRSKG DGDYELVKDV IFDEYLLKRI
401: TKTEAELLAE KRCVAHLTGE GIAFCDLPED TMLPGEM

Best Arabidopsis Sequence Match ( AT5G58330.2 )
(BLAST)

001: MAMAELSTPK TTSPFLNSSS RLRLSSKLHL SNHFRHLLLP PLHTTTPNSK ISCSVSQNQA PVAVQENGLV KTKKECYGVF CLTYDLKAEE ETRSWKKLIN
101: IAVSGAAGMI SNHLLFKLAS GEVFGPDQPI ALKLLGSERS IQALEGVAME LEDSLFPLLR EVDIGTDPNE VFQDVEWAIL IGAKPRGPGM ERADLLDING
201: QIFAEQGKAL NKAASPNVKV LVVGNPCNTN ALICLKNAPN IPAKNFHALT RLDENRAKCQ LALKAGVFYD KVSNMTIWGN HSTTQVPDFL NARINGLPVK
301: EVITDHKWLE EGFTESVQKR GGLLIQKWGR SSAASTAVSI VDAIKSLVTP TPEGDWFSTG VYTDGNPYGI EEGLVFSMPC RSKGDGDYEL VKDVEIDDYL
401: RQRIAKSEAE LLAEKRCVAH LTGEGIAYCD LGPVDTMLPG EV

Arabidopsis Description

Malate dehydrogenase [NADP], chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.