CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34668	Soybean	plastid	97.17	94.5
VIT_13s0019g05250.t01	Wine grape	plastid	81.84	79.41
PGSC0003DMT400079767	Potato	cytosol, plastid	80.42	77.85
GSMUA_AchrUn_...	Banana	cytosol	45.28	77.73
Solyc11g007990.1.1	Tomato	plastid	80.66	77.38
AT5G58330.1	Thale cress	plastid	80.66	77.2
CDY02811	Canola	plastid	79.95	76.7
CDY32711	Canola	plastid	79.95	76.52
Bra002660.1-P	Field mustard	plastid	79.72	76.47
CDY43863	Canola	plastid	79.72	76.3
Bra020374.1-P	Field mustard	plastid	79.72	76.3
CDY32993	Canola	plastid	79.48	76.24
HORVU4Hr1G090080.1	Barley	cytosol	65.09	76.24
CDY58562	Canola	plastid	79.48	75.9
CDX88669	Canola	plastid	79.48	75.9
Bra006772.1-P	Field mustard	plastid	79.48	75.9
Os08t0562100-01	Rice	plastid	76.42	74.83
Zm00001d031899_P002	Maize	plastid	75.47	74.07
EES15165	Sorghum	plastid	74.53	73.66
TraesCS7B01G197000.2	Wheat	mitochondrion, plastid	74.53	73.32
TraesCSU01G135100.2	Wheat	plastid	74.29	73.09
KXG25370	Sorghum	plastid	74.53	72.64
HORVU7Hr1G060260.5	Barley	plastid	73.58	72.06
TraesCS7D01G283900.1	Wheat	golgi	73.11	71.93
TraesCS5A01G549900.1	Wheat	cytosol	65.57	71.47
TraesCSU01G127700.1	Wheat	plastid	65.57	71.47
Solyc03g071590.2.1	Tomato	plastid	75.94	68.95
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, golgi, peroxisome	78.3	68.17
GSMUA_AchrUn_...	Banana	nucleus, peroxisome, plastid	18.87	59.26
KRH69119	Soybean	mitochondrion, nucleus	30.66	39.16
KRH31702	Soybean	endoplasmic reticulum	30.19	39.02
KRH19181	Soybean	endoplasmic reticulum	32.78	37.27

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00620+1.1.1.82	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37
KEGG:00710+1.1.1.37	KEGG:00710+1.1.1.82	KEGG:00720+1.1.1.37	MapMan:1.2.12	Gene3D:3.40.50.720	Gene3D:3.90.110.10
EMBL:ACUP02012730	EnsemblPlantsGene:GLYMA_20G192200	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099
GO:GO:0006107	GO:GO:0006108	GO:GO:0006139	GO:GO:0006734	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616
GO:GO:0030060	GO:GO:0046554	GO:GO:0055114	InterPro:IPR015955	UniProt:K7N4G1	EnsemblPlants:KRG92120
ProteinID:KRG92120	ProteinID:KRG92120.1	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS
InterPro:Malate_DH_NADP-dep_pln	InterPro:Malate_DH_type2	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	ScanProsite:PS00068
PANTHER:PTHR23382	PANTHER:PTHR23382:SF0	MetaCyc:PWY-1622	MetaCyc:PWY-241	MetaCyc:PWY-5392	MetaCyc:PWY-561
MetaCyc:PWY-5690	MetaCyc:PWY-5913	MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7115	MetaCyc:PWY-7117
MetaCyc:PWY-7383	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01757	TIGRFAMs:TIGR01759	UniParc:UPI000294A89B

Description

hypothetical protein

Coordinates

chr20:+:43081143..43086788

Molecular Weight (calculated)

46590.9 Da

IEP (calculated)

6.772

GRAVY (calculated)

-0.151

Length

424 amino acids

Sequence
(BLAST)

001: MGVTQLNPTC SKPRLHSSQL SFLSRTLPRH RHCTFAPLHR TQQARISCSV APNEVQVPTV KTQDPKSKPE CYGVFCLTYD LRAEEETRSW KKLINIAVSG
101: AAGMIANHLL FKLASGEVFG PDQPIALKLL GSERSIQALE GVAMELEDSL FPLLREVSIG IDPYEVFQDA EWALLIDLLD INGQIYAAQG RALNAVASRN
201: VKVIVVGNPC NTNALICLKN APNIPAKNFH ALTRLDENRA KCQLALKAGV FYDKVSNVTI WGNHSTTQVP DFLNARIDGL PVKEVVKDHK WLEEEFTEKV
301: QKRGGALIQK WGRSSAASTS VSIVDAIRSL VTPTPEGDWF SSGVYSNGNP YGIAEGIVFS MPCRSKGDGD YELVKDVIFD DYLRQRIAKT EAELLAEKRC
401: VAHLTGEGIA VCDLPGDTML PGEM

Best Arabidopsis Sequence Match ( AT5G58330.2 )
(BLAST)

001: MAMAELSTPK TTSPFLNSSS RLRLSSKLHL SNHFRHLLLP PLHTTTPNSK ISCSVSQNQA PVAVQENGLV KTKKECYGVF CLTYDLKAEE ETRSWKKLIN
101: IAVSGAAGMI SNHLLFKLAS GEVFGPDQPI ALKLLGSERS IQALEGVAME LEDSLFPLLR EVDIGTDPNE VFQDVEWAIL IGAKPRGPGM ERADLLDING
201: QIFAEQGKAL NKAASPNVKV LVVGNPCNTN ALICLKNAPN IPAKNFHALT RLDENRAKCQ LALKAGVFYD KVSNMTIWGN HSTTQVPDFL NARINGLPVK
301: EVITDHKWLE EGFTESVQKR GGLLIQKWGR SSAASTAVSI VDAIKSLVTP TPEGDWFSTG VYTDGNPYGI EEGLVFSMPC RSKGDGDYEL VKDVEIDDYL
401: RQRIAKSEAE LLAEKRCVAH LTGEGIAYCD LGPVDTMLPG EV

Arabidopsis Description

Malate dehydrogenase [NADP], chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.