Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G075560.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G58330.1 | HORVU1Hr1G075560.1 | AT5G42980.1 | 15352244 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G549900.1 | Wheat | cytosol | 88.4 | 82.26 |
| TraesCSU01G127700.1 | Wheat | plastid | 87.57 | 81.49 |
| GSMUA_AchrUn_... | Banana | cytosol | 50.83 | 74.49 |
| HORVU7Hr1G060260.5 | Barley | plastid | 87.85 | 73.44 |
| Os08t0562100-01 | Rice | plastid | 85.91 | 71.82 |
| Zm00001d031899_P002 | Maize | plastid | 84.81 | 71.06 |
| EES15165 | Sorghum | plastid | 82.6 | 69.7 |
| KXG25370 | Sorghum | plastid | 82.6 | 68.74 |
| PGSC0003DMT400079767 | Potato | cytosol, plastid | 82.32 | 68.04 |
| Solyc11g007990.1.1 | Tomato | plastid | 82.32 | 67.42 |
| VIT_13s0019g05250.t01 | Wine grape | plastid | 80.94 | 67.05 |
| Bra006772.1-P | Field mustard | plastid | 80.94 | 65.99 |
| CDX88669 | Canola | plastid | 80.94 | 65.99 |
| CDY58562 | Canola | plastid | 80.94 | 65.99 |
| Bra002660.1-P | Field mustard | plastid | 80.39 | 65.84 |
| CDY32993 | Canola | plastid | 80.39 | 65.84 |
| CDY02811 | Canola | plastid | 80.39 | 65.84 |
| CDY43863 | Canola | plastid | 80.39 | 65.69 |
| KRH34668 | Soybean | plastid | 79.01 | 65.6 |
| CDY32711 | Canola | plastid | 80.11 | 65.46 |
| Bra020374.1-P | Field mustard | plastid | 80.11 | 65.46 |
| KRG92120 | Soybean | plastid | 76.24 | 65.09 |
| AT5G58330.1 | Thale cress | plastid | 79.28 | 64.79 |
| Solyc03g071590.2.1 | Tomato | plastid | 80.11 | 62.1 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, golgi, peroxisome | 80.66 | 59.96 |
| GSMUA_AchrUn_... | Banana | nucleus, peroxisome, plastid | 17.13 | 45.93 |
| HORVU1Hr1G041250.5 | Barley | extracellular | 36.74 | 39.94 |
Protein Annotations
| KEGG:00020+1.1.1.37 | KEGG:00270+1.1.1.37 | KEGG:00620+1.1.1.37 | KEGG:00620+1.1.1.82 | KEGG:00630+1.1.1.37 | KEGG:00680+1.1.1.37 |
| KEGG:00710+1.1.1.37 | KEGG:00710+1.1.1.82 | KEGG:00720+1.1.1.37 | MapMan:1.2.12 | Gene3D:3.40.50.720 | Gene3D:3.90.110.10 |
| UniProt:A0A287Q3X6 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005975 | GO:GO:0006091 | GO:GO:0006099 |
| GO:GO:0006108 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016491 | GO:GO:0016615 |
| GO:GO:0016616 | GO:GO:0019752 | GO:GO:0030060 | GO:GO:0046554 | GO:GO:0055114 | EnsemblPlantsGene:HORVU4Hr1G090080 |
| EnsemblPlants:HORVU4Hr1G090080.1 | InterPro:IPR015955 | InterPro:L-lactate/malate_DH | InterPro:Lactate/malate_DH_C | InterPro:Lactate/malate_DH_N | InterPro:Lactate_DH/Glyco_Ohase_4_C |
| InterPro:Malate_DH_AS | InterPro:Malate_DH_NADP-dep_pln | InterPro:Malate_DH_type2 | InterPro:NAD(P)-bd_dom_sf | PFAM:PF00056 | PFAM:PF02866 |
| PIRSF:PIRSF000102 | ScanProsite:PS00068 | PANTHER:PTHR23382 | PANTHER:PTHR23382:SF0 | SUPFAM:SSF51735 | SUPFAM:SSF56327 |
| TIGRFAMs:TIGR01757 | TIGRFAMs:TIGR01759 | UniParc:UPI000B486DC3 | : | : | : |
Description
Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A287Q3X6]
Coordinates
chrchr4H:+:644409589..644417798
Molecular Weight (calculated)
39434.6 Da
IEP (calculated)
6.165
GRAVY (calculated)
-0.083
Length
362 amino acids
Sequence
(BLAST)
(BLAST)
001: IALQTLIRPD SLDENTKSWK KLANVSVSGA AGMISNHLLF KLASGEVFGQ DQPIALKLLG SENSLQALEG LAMELEDSLY PLLREVSIGI DPYVIFQDAD
101: WALLIGAKPR GPGMERAAIL DINGQIFAEQ GKALNAVASR NVKIIVVGNP CNTNALICMK NAPNLPAKNF HALTRLDENR AKFQLALKAG VLYDKVSNMT
201: IWGNHSTNQV PDFLNAKING KPVKEVIKDT KWLEEDFTIT VQKRGGVLIE KRGRSSAAST AVSIVDAMRS LITPSPKGDW FSTAVYTTGN PYGIAEDLIF
301: SMPCRSKGDG DYELVQDMAM DDFLWGRIKK SEAELIIEKR CVAHLTGEGN AFCALPGDTM LP
101: WALLIGAKPR GPGMERAAIL DINGQIFAEQ GKALNAVASR NVKIIVVGNP CNTNALICMK NAPNLPAKNF HALTRLDENR AKFQLALKAG VLYDKVSNMT
201: IWGNHSTNQV PDFLNAKING KPVKEVIKDT KWLEEDFTIT VQKRGGVLIE KRGRSSAAST AVSIVDAMRS LITPSPKGDW FSTAVYTTGN PYGIAEDLIF
301: SMPCRSKGDG DYELVQDMAM DDFLWGRIKK SEAELIIEKR CVAHLTGEGN AFCALPGDTM LP
001: MAMAELSTPK TTSPFLNSSS RLRLSSKLHL SNHFRHLLLP PLHTTTPNSK ISCSVSQNSQ APVAVQENGL VKTKKECYGV FCLTYDLKAE EETRSWKKLI
101: NIAVSGAAGM ISNHLLFKLA SGEVFGPDQP IALKLLGSER SIQALEGVAM ELEDSLFPLL REVDIGTDPN EVFQDVEWAI LIGAKPRGPG MERADLLDIN
201: GQIFAEQGKA LNKAASPNVK VLVVGNPCNT NALICLKNAP NIPAKNFHAL TRLDENRAKC QLALKAGVFY DKVSNMTIWG NHSTTQVPDF LNARINGLPV
301: KEVITDHKWL EEGFTESVQK RGGLLIQKWG RSSAASTAVS IVDAIKSLVT PTPEGDWFST GVYTDGNPYG IEEGLVFSMP CRSKGDGDYE LVKDVEIDDY
401: LRQRIAKSEA ELLAEKRCVA HLTGEGIAYC DLGPVDTMLP GEV
101: NIAVSGAAGM ISNHLLFKLA SGEVFGPDQP IALKLLGSER SIQALEGVAM ELEDSLFPLL REVDIGTDPN EVFQDVEWAI LIGAKPRGPG MERADLLDIN
201: GQIFAEQGKA LNKAASPNVK VLVVGNPCNT NALICLKNAP NIPAKNFHAL TRLDENRAKC QLALKAGVFY DKVSNMTIWG NHSTTQVPDF LNARINGLPV
301: KEVITDHKWL EEGFTESVQK RGGLLIQKWG RSSAASTAVS IVDAIKSLVT PTPEGDWFST GVYTDGNPYG IEEGLVFSMP CRSKGDGDYE LVKDVEIDDY
401: LRQRIAKSEA ELLAEKRCVA HLTGEGIAYC DLGPVDTMLP GEV
Arabidopsis Description
Malate dehydrogenase [NADP], chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.