Factsheet for PGSC0003DMT400079767

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g007990.1.1	Tomato	plastid	98.63	97.74
VIT_13s0019g05250.t01	Wine grape	plastid	82.19	82.38
HORVU4Hr1G090080.1	Barley	cytosol	68.04	82.32
GSMUA_AchrUn_...	Banana	cytosol	45.89	81.38
KRH34668	Soybean	plastid	80.37	80.73
KRG92120	Soybean	plastid	77.85	80.42
Os08t0562100-01	Rice	plastid	77.63	78.52
Zm00001d031899_P002	Maize	plastid	77.17	78.24
TraesCS7D01G283900.1	Wheat	golgi	76.71	77.96
TraesCSU01G127700.1	Wheat	plastid	68.49	77.12
Bra002660.1-P	Field mustard	plastid	77.63	76.92
CDY02811	Canola	plastid	77.63	76.92
TraesCS5A01G549900.1	Wheat	cytosol	68.26	76.86
TraesCS7B01G197000.2	Wheat	mitochondrion, plastid	75.57	76.8
Bra020374.1-P	Field mustard	plastid	77.63	76.75
TraesCSU01G135100.2	Wheat	plastid	75.34	76.57
CDY43863	Canola	plastid	77.4	76.52
CDY32711	Canola	plastid	77.4	76.52
CDY32993	Canola	plastid	77.17	76.47
EES15165	Sorghum	plastid	74.89	76.46
Bra006772.1-P	Field mustard	plastid	77.4	76.35
CDX88669	Canola	plastid	77.4	76.35
CDY58562	Canola	plastid	76.94	75.9
KXG25370	Sorghum	plastid	75.34	75.86
AT5G58330.1	Thale cress	plastid	76.71	75.85
HORVU7Hr1G060260.5	Barley	plastid	74.66	75.52
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, golgi, peroxisome	75.8	68.17
GSMUA_AchrUn_...	Banana	nucleus, peroxisome, plastid	17.35	56.3
PGSC0003DMT400044217	Potato	cytosol	30.14	39.76
PGSC0003DMT400066960	Potato	mitochondrion	26.94	34.91

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00620+1.1.1.82	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37
KEGG:00710+1.1.1.37	KEGG:00710+1.1.1.82	KEGG:00720+1.1.1.37	MapMan:1.2.12	EntrezGene:102582818	Gene3D:3.40.50.720
Gene3D:3.90.110.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0006108
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616
GO:GO:0046554	GO:GO:0055114	InterPro:IPR015955	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C
UniProt:M1D2E4	InterPro:Malate_DH_AS	InterPro:Malate_DH_NADP-dep_pln	InterPro:Malate_DH_type2	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056
PFAM:PF02866	EnsemblPlantsGene:PGSC0003DMG400031063	PGSC:PGSC0003DMG400031063	EnsemblPlants:PGSC0003DMT400079767	ScanProsite:PS00068	PANTHER:PTHR23382
PANTHER:PTHR23382:SF0	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01757	TIGRFAMs:TIGR01759	UniParc:UPI000295E0DF
RefSeq:XP_006361712.1	:	:	:	:	:

Description

Malate dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400031063]

Coordinates

chr11:-:4002560..4009452

Molecular Weight (calculated)

47996.7 Da

IEP (calculated)

6.377

GRAVY (calculated)

-0.133

Length

438 amino acids

Sequence
(BLAST)

001: MAVAEFIPSS SLTKKASFYS SQLSYVSTKI SHQRRLSFKP LSRTSQICCS VTSKEAQAPT VVQTDDPKKK SECYGVFCLT YDLKAEEEMS SWKKMITVSV
101: SGAAGMIANH LLFKLASGEV FGPDQPIALR LLGSERSIQA LEGVAMELED SLYPLLREVN IGIDPYEVFQ DAEWALLIGA KPRGPGMERA GLLDINGQIF
201: AEQGKALNAV ASRNVKVIVV GNPCNTNALI CLKNAPNIPA KNFHALTRLD ENRAKCQLAL KAGVFYDKVS NVTIWGNHST TQVPDFLNAK INGLPVKEVI
301: KDTKWLEEEF TVKVQKRGGV LIQKWGRSSA ASTAVSIVDA IRSLVTPTPE GDWFSTGVYT NGNPYGIAED IVFSMPCRSK GDGDYELVKE VIFDDYLWNR
401: IKKSEDELLA EKRCVAHLTG EGIAVCDLPG DTMLPGEM

Best Arabidopsis Sequence Match ( AT5G58330.1 )
(BLAST)

001: MAMAELSTPK TTSPFLNSSS RLRLSSKLHL SNHFRHLLLP PLHTTTPNSK ISCSVSQNSQ APVAVQENGL VKTKKECYGV FCLTYDLKAE EETRSWKKLI
101: NIAVSGAAGM ISNHLLFKLA SGEVFGPDQP IALKLLGSER SIQALEGVAM ELEDSLFPLL REVDIGTDPN EVFQDVEWAI LIGAKPRGPG MERADLLDIN
201: GQIFAEQGKA LNKAASPNVK VLVVGNPCNT NALICLKNAP NIPAKNFHAL TRLDENRAKC QLALKAGVFY DKVSNMTIWG NHSTTQVPDF LNARINGLPV
301: KEVITDHKWL EEGFTESVQK RGGLLIQKWG RSSAASTAVS IVDAIKSLVT PTPEGDWFST GVYTDGNPYG IEEGLVFSMP CRSKGDGDYE LVKDVEIDDY
401: LRQRIAKSEA ELLAEKRCVA HLTGEGIAYC DLGPVDTMLP GEV

Arabidopsis Description

Malate dehydrogenase [NADP], chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.