CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU78269

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58330.1	OQU78269	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031899_P002	Maize	plastid	92.18	92.82
EES15165	Sorghum	plastid	91.03	92.31
TraesCSU01G135100.2	Wheat	plastid	82.76	83.53
Os08t0562100-01	Rice	plastid	82.53	82.91
TraesCS7B01G197000.2	Wheat	mitochondrion, plastid	82.07	82.83
HORVU4Hr1G090080.1	Barley	cytosol	68.74	82.6
HORVU7Hr1G060260.5	Barley	plastid	81.61	81.99
TraesCS7D01G283900.1	Wheat	golgi	80.46	81.21
GSMUA_AchrUn_...	Banana	cytosol	45.29	79.76
TraesCS5A01G549900.1	Wheat	cytosol	71.26	79.69
TraesCSU01G127700.1	Wheat	plastid	71.03	79.43
VIT_13s0019g05250.t01	Wine grape	plastid	77.24	76.89
CDY58562	Canola	plastid	77.01	75.45
Bra006772.1-P	Field mustard	plastid	77.01	75.45
CDX88669	Canola	plastid	77.01	75.45
PGSC0003DMT400079767	Potato	cytosol, plastid	75.86	75.34
CDY02811	Canola	plastid	76.55	75.34
KRH34668	Soybean	plastid	75.17	75.0
CDY32711	Canola	plastid	76.32	74.94
CDY32993	Canola	plastid	76.09	74.89
Bra020374.1-P	Field mustard	plastid	76.09	74.72
Solyc11g007990.1.1	Tomato	plastid	75.86	74.66
Bra002660.1-P	Field mustard	plastid	75.86	74.66
KRG92120	Soybean	plastid	72.64	74.53
CDY43863	Canola	plastid	75.86	74.49
AT5G58330.1	Thale cress	plastid	74.94	73.59
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, golgi, peroxisome	77.24	68.99
Solyc03g071590.2.1	Tomato	plastid	73.56	68.52
GSMUA_AchrUn_...	Banana	nucleus, peroxisome, plastid	18.62	60.0
EER94077	Sorghum	peroxisome	31.26	40.96
KXG26853	Sorghum	mitochondrion	31.49	38.7

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00620+1.1.1.82	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37
KEGG:00710+1.1.1.37	KEGG:00710+1.1.1.82	KEGG:00720+1.1.1.37	MapMan:1.2.12	Gene3D:3.40.50.720	Gene3D:3.90.110.10
UniProt:A0A1B6PI58	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0006108	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0046554
GO:GO:0055114	InterPro:IPR015955	EnsemblPlants:KXG25370	ProteinID:KXG25370	ProteinID:KXG25370.1	InterPro:Lactate/malate_DH_C
InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS	InterPro:Malate_DH_NADP-dep_pln	InterPro:Malate_DH_type2	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00056	PFAM:PF02866	ScanProsite:PS00068	PANTHER:PTHR23382	PANTHER:PTHR23382:SF0	MetaCyc:PWY-1622
MetaCyc:PWY-241	MetaCyc:PWY-5392	MetaCyc:PWY-561	MetaCyc:PWY-5690	MetaCyc:PWY-5913	MetaCyc:PWY-6728
MetaCyc:PWY-6969	MetaCyc:PWY-7115	MetaCyc:PWY-7117	MetaCyc:PWY-7383	EnsemblPlantsGene:SORBI_3007G166200	SUPFAM:SSF51735
SUPFAM:SSF56327	TIGRFAMs:TIGR01757	TIGRFAMs:TIGR01759	UniParc:UPI0001C80C96	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:-:60144110..60147872

Molecular Weight (calculated)

47025.2 Da

IEP (calculated)

5.363

GRAVY (calculated)

-0.115

Length

435 amino acids

Sequence
(BLAST)

001: MGLSTAYSPA GSGLVPAPLG AGAARRRSVQ VRRPRLATVR CSVVDAANRQ VQDGVATAVA AEAPASRNEC FGVFCNIYDL KAEDKTKSWK KLVNIAVSGA
101: AGMISNHLLF KLASGEVFGQ DQPIALKLLG SERSFQALEG VAMELEDSLY PLLREVSIGI DPYEVFQDVD WALLIGAKPR GPGMERAALL DINGQIFADQ
201: GKALNAVASR NVKVLVVGNP CNTNALICLK NTPNIPAKNF HALTRLDENR AKCQIALKAG VFYDKVSNVT IWGNHSTTQV PDFLNAKIDG RPVKEIIQDT
301: KWLEEEFTMT VQKRGGVLIQ KWGRSSAAST AVSIVDAIKS LVTPTPEGEW FSTGVYTTGN PYGIAEDIVF SMPCRSKGDG DYELATDVSM DDFLWERIKK
401: SEAELLAEKK CVAHLTGEGD AFCDLPEDTM LPGEN

Best Arabidopsis Sequence Match ( AT5G58330.1 )
(BLAST)

001: MAMAELSTPK TTSPFLNSSS RLRLSSKLHL SNHFRHLLLP PLHTTTPNSK ISCSVSQNSQ APVAVQENGL VKTKKECYGV FCLTYDLKAE EETRSWKKLI
101: NIAVSGAAGM ISNHLLFKLA SGEVFGPDQP IALKLLGSER SIQALEGVAM ELEDSLFPLL REVDIGTDPN EVFQDVEWAI LIGAKPRGPG MERADLLDIN
201: GQIFAEQGKA LNKAASPNVK VLVVGNPCNT NALICLKNAP NIPAKNFHAL TRLDENRAKC QLALKAGVFY DKVSNMTIWG NHSTTQVPDF LNARINGLPV
301: KEVITDHKWL EEGFTESVQK RGGLLIQKWG RSSAASTAVS IVDAIKSLVT PTPEGDWFST GVYTDGNPYG IEEGLVFSMP CRSKGDGDYE LVKDVEIDDY
401: LRQRIAKSEA ELLAEKRCVA HLTGEGIAYC DLGPVDTMLP GEV

Arabidopsis Description

Malate dehydrogenase [NADP], chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.