CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58330.1	CDY32970	AT5G42980.1	15352244
AT5G58330.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006772.1-P	Field mustard	plastid	100.0	100.0
CDY58562	Canola	plastid	99.32	99.32
CDY02811	Canola	plastid	97.07	97.51
CDY32711	Canola	plastid	97.07	97.29
CDY32993	Canola	plastid	96.62	97.06
CDY43863	Canola	plastid	96.62	96.84
AT5G58330.1	Thale cress	plastid	93.24	93.45
HORVU4Hr1G090080.1	Barley	cytosol	65.99	80.94
GSMUA_AchrUn_...	Banana	cytosol	44.59	80.16
KRG92120	Soybean	plastid	75.9	79.48
VIT_13s0019g05250.t01	Wine grape	plastid	77.93	79.18
EES15165	Sorghum	plastid	76.35	79.02
KRH34668	Soybean	plastid	77.48	78.9
Zm00001d031899_P002	Maize	plastid	76.35	78.47
Os08t0562100-01	Rice	plastid	76.35	78.29
PGSC0003DMT400079767	Potato	cytosol, plastid	76.35	77.4
Solyc11g007990.1.1	Tomato	plastid	77.03	77.38
KXG25370	Sorghum	plastid	75.45	77.01
TraesCSU01G135100.2	Wheat	plastid	74.32	76.57
TraesCS7D01G283900.1	Wheat	golgi	73.87	76.1
TraesCS7B01G197000.2	Wheat	mitochondrion, plastid	73.87	76.1
TraesCS5A01G549900.1	Wheat	cytosol	65.99	75.32
HORVU7Hr1G060260.5	Barley	plastid	73.42	75.29
TraesCSU01G127700.1	Wheat	plastid	65.32	74.55
Solyc03g071590.2.1	Tomato	plastid	76.58	72.81
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, golgi, peroxisome	76.13	69.4
GSMUA_AchrUn_...	Banana	nucleus, peroxisome, plastid	17.34	57.04
CDX98109	Canola	cytosol, endoplasmic reticulum, peroxisome	21.62	43.84
CDY67454	Canola	cytosol, endoplasmic reticulum, peroxisome	30.41	40.66
CDY32953	Canola	peroxisome	30.41	40.66
CDY43609	Canola	peroxisome	30.41	40.66
CDY15504	Canola	cytosol, endoplasmic reticulum, peroxisome	30.41	40.66
CDX89826	Canola	peroxisome	29.95	40.06
CDY18230	Canola	peroxisome	29.95	40.06
CDY32764	Canola	endoplasmic reticulum	32.43	38.61
CDY32878	Canola	endoplasmic reticulum, golgi, plasma membrane	32.21	38.34

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00620+1.1.1.82	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37
KEGG:00710+1.1.1.37	KEGG:00710+1.1.1.82	KEGG:00720+1.1.1.37	MapMan:1.2.12	Gene3D:3.40.50.720	Gene3D:3.90.110.10
GO:A0A078DJ94	EnsemblPlants:CDX88669	ProteinID:CDX88669	ProteinID:CDX88669.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005975	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0016615	GO:GO:0016616	GO:GO:0046554	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00148712001	InterPro:IPR015955
InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	HAMAP:MF_01517	InterPro:Malate_DH_AS	InterPro:Malate_DH_NADP-dep_pln
InterPro:Malate_DH_type2	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	ScanProsite:PS00068	PANTHER:PTHR23382
PANTHER:PTHR23382:SF0	MetaCyc:PWY-1622	MetaCyc:PWY-241	MetaCyc:PWY-5392	MetaCyc:PWY-561	MetaCyc:PWY-5690
MetaCyc:PWY-5913	MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7115	MetaCyc:PWY-7117	MetaCyc:PWY-7383
SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01757	TIGRFAMs:TIGR01759	UniParc:UPI0002540371	SEG:seg

Description

BnaA03g09800D

Coordinates

chrLK031856:-:407409..410060

Molecular Weight (calculated)

48269.9 Da

IEP (calculated)

6.425

GRAVY (calculated)

-0.141

Length

444 amino acids

Sequence
(BLAST)

001: MAMSDLSTPK TTSPFLPSSS QLRLSSKLHL SNQFRHLHLL PPPLHTTSIS KISCSVSQNN QAPVAVQENG SVKTKKECYG VFCLTYDLKA EEETKSWKKM
101: INIAVSGAAG MISNHLLFKL ASGSVFGPDQ PIALKLLGSE RSIQALEGVA MELEDSLFPL LREVDIGTDP YEVFQDVDWA LLIGAKPRGP GMERAALLDI
201: NGQIFAEQGK ALNAVASPNV KVLVVGNPCN TNALICLKNA PNIPAKNFHA LTRLDENRAK CQLALKAGVF YDKVSNMTIW GNHSTTQVPD FLNARINGRP
301: VKEVITDHKW LEEGFTESVQ KRGGLLIQKW GRSSAASTAV SIVDAIKSLV TPTPEGDWFS TGVYTNGNPY GIAEDLVFSM PCRSKGDGDY ELVKDVEIDD
401: YLRNRIAKSE AELLAEKKCV AHLTGDGIAF CDLGPVDTML PGEV

Best Arabidopsis Sequence Match ( AT5G58330.1 )
(BLAST)

001: MAMAELSTPK TTSPFLNSSS RLRLSSKLHL SNHFRHLLLP PLHTTTPNSK ISCSVSQNSQ APVAVQENGL VKTKKECYGV FCLTYDLKAE EETRSWKKLI
101: NIAVSGAAGM ISNHLLFKLA SGEVFGPDQP IALKLLGSER SIQALEGVAM ELEDSLFPLL REVDIGTDPN EVFQDVEWAI LIGAKPRGPG MERADLLDIN
201: GQIFAEQGKA LNKAASPNVK VLVVGNPCNT NALICLKNAP NIPAKNFHAL TRLDENRAKC QLALKAGVFY DKVSNMTIWG NHSTTQVPDF LNARINGLPV
301: KEVITDHKWL EEGFTESVQK RGGLLIQKWG RSSAASTAVS IVDAIKSLVT PTPEGDWFST GVYTDGNPYG IEEGLVFSMP CRSKGDGDYE LVKDVEIDDY
401: LRQRIAKSEA ELLAEKRCVA HLTGEGIAYC DLGPVDTMLP GEV

Arabidopsis Description

Malate dehydrogenase [NADP], chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.