Factsheet for TraesCS7D01G283900.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G325600.1
TraesCS1B01G338800.1
TraesCS1B01G339000.1
TraesCS1D01G327500.1
TraesCS7A01G562100.1
TraesCS7D01G001000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58330.1	TraesCS1A01G325600.1	AT5G42980.1	15352244
AT5G58330.1	TraesCS1B01G338800.1	AT5G42980.1	15352244
AT5G58330.1	TraesCS1B01G339000.1	AT5G42980.1	15352244
AT5G58330.1	TraesCS1D01G327500.1	AT5G42980.1	15352244
AT5G58330.1	TraesCS7A01G562100.1	AT5G42980.1	15352244
AT5G58330.1	TraesCS7D01G001000.1	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G135100.2	Wheat	plastid	89.33	89.33
TraesCS7B01G197000.2	Wheat	mitochondrion, plastid	89.1	89.1
HORVU7Hr1G060260.5	Barley	plastid	88.4	87.99
Os08t0562100-01	Rice	plastid	84.92	84.53
Zm00001d031899_P002	Maize	plastid	83.06	82.87
EES15165	Sorghum	plastid	81.67	82.05
KXG25370	Sorghum	plastid	81.21	80.46
GSMUA_AchrUn_...	Banana	cytosol	45.94	80.16
PGSC0003DMT400079767	Potato	cytosol, plastid	77.96	76.71
Solyc11g007990.1.1	Tomato	plastid	77.96	76.02
VIT_13s0019g05250.t01	Wine grape	plastid	76.57	75.51
CDY58562	Canola	plastid	76.1	73.87
CDX88669	Canola	plastid	76.1	73.87
Bra006772.1-P	Field mustard	plastid	76.1	73.87
CDY02811	Canola	plastid	75.64	73.76
KRH34668	Soybean	plastid	74.48	73.62
CDY32711	Canola	plastid	75.64	73.59
Bra002660.1-P	Field mustard	plastid	75.41	73.53
CDY32993	Canola	plastid	75.41	73.53
CDY43863	Canola	plastid	75.41	73.36
Bra020374.1-P	Field mustard	plastid	75.41	73.36
KRG92120	Soybean	plastid	71.93	73.11
AT5G58330.1	Thale cress	plastid	74.48	72.46
Solyc03g071590.2.1	Tomato	plastid	76.1	70.24
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, golgi, peroxisome	76.8	67.97
GSMUA_AchrUn_...	Banana	nucleus, peroxisome, plastid	18.33	58.52
TraesCS1D01G153900.1	Wheat	golgi, plastid	30.39	39.34

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00620+1.1.1.82	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37
KEGG:00710+1.1.1.37	KEGG:00710+1.1.1.82	KEGG:00720+1.1.1.37	MapMan:1.2.12	Gene3D:3.40.50.720	Gene3D:3.90.110.10
GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0046554	GO:GO:0055114
InterPro:IPR015955	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS	InterPro:Malate_DH_NADP-dep_pln
InterPro:Malate_DH_type2	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	ScanProsite:PS00068	PANTHER:PTHR23382
PANTHER:PTHR23382:SF0	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01757	TIGRFAMs:TIGR01759	EnsemblPlantsGene:TraesCS7D01G283900
EnsemblPlants:TraesCS7D01G283900.1	TIGR:cd01338	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7D:-:296508047..296511611

Molecular Weight (calculated)

46817.3 Da

IEP (calculated)

7.340

GRAVY (calculated)

-0.144

Length

431 amino acids

Sequence
(BLAST)

001: MDLSSLARPQ ALRGGSTGAL GAHAARRRSV QLLRPRRPTF RCSVEAAKQQ VQGTLAAEAE AARKECFGVF CTTYDLEADE KTKSWKKLVN VSVSGAAGMI
101: SNHLLFKLAS GEVFGQDQPI ALKLLGSERS LQALEGVAME LEDSLYPLLR EVSIGIDPYV IFEDADWALL IGAKPRGPGV ERAALLDING QIFAEQGKAL
201: NAVASRNVKV IVVGNPCNTN ALICLKNAPN LPAKNFHALT RLDENRAKCQ LALKAGVFYD KISNMTIWGN HSTTQVPDFL NAKINGRPVK EVIKDTKWLE
301: EDFTITVQKR GGVLIQKWGR SSAASTAVSI VDAMRSLVTP TPEGDWFSTG VYTTGNPYGI AEDIVFSMPC RSKGDGDYEL VKDVAMDDFL WGRIKKSEAE
401: LIAEKRCVAH LTGEGNAFCD LPGDTMLPGE M

Best Arabidopsis Sequence Match ( AT5G58330.1 )
(BLAST)

001: MAMAELSTPK TTSPFLNSSS RLRLSSKLHL SNHFRHLLLP PLHTTTPNSK ISCSVSQNSQ APVAVQENGL VKTKKECYGV FCLTYDLKAE EETRSWKKLI
101: NIAVSGAAGM ISNHLLFKLA SGEVFGPDQP IALKLLGSER SIQALEGVAM ELEDSLFPLL REVDIGTDPN EVFQDVEWAI LIGAKPRGPG MERADLLDIN
201: GQIFAEQGKA LNKAASPNVK VLVVGNPCNT NALICLKNAP NIPAKNFHAL TRLDENRAKC QLALKAGVFY DKVSNMTIWG NHSTTQVPDF LNARINGLPV
301: KEVITDHKWL EEGFTESVQK RGGLLIQKWG RSSAASTAVS IVDAIKSLVT PTPEGDWFST GVYTDGNPYG IEEGLVFSMP CRSKGDGDYE LVKDVEIDDY
401: LRQRIAKSEA ELLAEKRCVA HLTGEGIAYC DLGPVDTMLP GEV

Arabidopsis Description

Malate dehydrogenase [NADP], chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.