Factsheet for TraesCSU01G135100.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22736107
golgi: 25769308

msms PMID: 22736107 doi

AH Kamal, K Cho, DE Kim, N Uozumi, KY Chung, SY Lee, JS Choi, SW Cho, CS Shin, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G325600.1
TraesCS1B01G338800.1
TraesCS1B01G339000.1
TraesCS1D01G327500.1
TraesCS7A01G562100.1
TraesCS7D01G001000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58330.1	TraesCS1A01G325600.1	AT5G42980.1	15352244
AT5G58330.1	TraesCS1B01G338800.1	AT5G42980.1	15352244
AT5G58330.1	TraesCS1B01G339000.1	AT5G42980.1	15352244
AT5G58330.1	TraesCS1D01G327500.1	AT5G42980.1	15352244
AT5G58330.1	TraesCS7A01G562100.1	AT5G42980.1	15352244
AT5G58330.1	TraesCS7D01G001000.1	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G197000.2	Wheat	mitochondrion, plastid	97.91	97.91
HORVU7Hr1G060260.5	Barley	plastid	96.52	96.07
TraesCS7D01G283900.1	Wheat	golgi	89.33	89.33
Os08t0562100-01	Rice	plastid	86.77	86.37
TraesCSU01G127700.1	Wheat	plastid	76.57	84.83
Zm00001d031899_P002	Maize	plastid	84.69	84.49
EES15165	Sorghum	plastid	83.76	84.15
KXG25370	Sorghum	plastid	83.53	82.76
GSMUA_AchrUn_...	Banana	cytosol	45.48	79.35
PGSC0003DMT400079767	Potato	cytosol, plastid	76.57	75.34
VIT_13s0019g05250.t01	Wine grape	plastid	75.87	74.83
Solyc11g007990.1.1	Tomato	plastid	76.57	74.66
CDY58562	Canola	plastid	76.57	74.32
CDX88669	Canola	plastid	76.57	74.32
Bra006772.1-P	Field mustard	plastid	76.57	74.32
KRH34668	Soybean	plastid	75.17	74.31
KRG92120	Soybean	plastid	73.09	74.29
CDY02811	Canola	plastid	75.87	73.98
CDY32993	Canola	plastid	75.64	73.76
CDY32711	Canola	plastid	75.64	73.59
Bra020374.1-P	Field mustard	plastid	75.64	73.59
Bra002660.1-P	Field mustard	plastid	75.41	73.53
CDY43863	Canola	plastid	75.41	73.36
AT5G58330.1	Thale cress	plastid	74.25	72.23
Solyc03g071590.2.1	Tomato	plastid	74.94	69.16
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, golgi, peroxisome	77.03	68.17
GSMUA_AchrUn_...	Banana	nucleus, peroxisome, plastid	18.56	59.26

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00620+1.1.1.82	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37
KEGG:00710+1.1.1.37	KEGG:00710+1.1.1.82	KEGG:00720+1.1.1.37	MapMan:1.2.12	Gene3D:3.40.50.720	Gene3D:3.90.110.10
GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0046554	GO:GO:0055114
InterPro:IPR015955	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS	InterPro:Malate_DH_NADP-dep_pln
InterPro:Malate_DH_type2	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	ScanProsite:PS00068	PANTHER:PTHR23382
PANTHER:PTHR23382:SF0	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01757	TIGRFAMs:TIGR01759	EnsemblPlantsGene:TraesCSU01G135100
EnsemblPlants:TraesCSU01G135100.2	TIGR:cd01338	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrUn:-:116430980..116434525

Molecular Weight (calculated)

46675.1 Da

IEP (calculated)

7.675

GRAVY (calculated)

-0.128

Length

431 amino acids

Sequence
(BLAST)

001: MDLSSLASPQ ALRGGSTGAL GAHAARRRSV QLLRPRRPTF RCSVEAANAR QQVQGTLAAE AARKECFGVF CTTYDLEADE KTKSWKKLVN VSVSGAAGMI
101: SNHLLFKLAS GEVFGQDQPI ALKLLGSERS LQALEGVAME LEDSLYPLLR EVSIGIDPYV IFEDADWALL IGAKPRGPGV ERAALLDING QIFAEQGKAL
201: NAVASRNVKV IVVGNPCNTN ALICLKNAPN LPAKNFHALT RLDENRAKCQ LALKAGVFYD KISNMTIWGN HSTTQVPDFL NAKINGRPVK EVIKDTKWLE
301: EDFTITVQKR GGVLIQKWGR SSAASTAVSI VDAMRSLVTP TPEGDWFSTG VYTTGNPYGI AEDIVFSMPC RSKGGGDYEL VKDVAMDDFL WGRIKKSEAE
401: LIAEKKCVAH LTGEGNAFCD LPGDTMLPGE M

Best Arabidopsis Sequence Match ( AT5G58330.1 )
(BLAST)

001: MAMAELSTPK TTSPFLNSSS RLRLSSKLHL SNHFRHLLLP PLHTTTPNSK ISCSVSQNSQ APVAVQENGL VKTKKECYGV FCLTYDLKAE EETRSWKKLI
101: NIAVSGAAGM ISNHLLFKLA SGEVFGPDQP IALKLLGSER SIQALEGVAM ELEDSLFPLL REVDIGTDPN EVFQDVEWAI LIGAKPRGPG MERADLLDIN
201: GQIFAEQGKA LNKAASPNVK VLVVGNPCNT NALICLKNAP NIPAKNFHAL TRLDENRAKC QLALKAGVFY DKVSNMTIWG NHSTTQVPDF LNARINGLPV
301: KEVITDHKWL EEGFTESVQK RGGLLIQKWG RSSAASTAVS IVDAIKSLVT PTPEGDWFST GVYTDGNPYG IEEGLVFSMP CRSKGDGDYE LVKDVEIDDY
401: LRQRIAKSEA ELLAEKRCVA HLTGEGIAYC DLGPVDTMLP GEV

Arabidopsis Description

Malate dehydrogenase [NADP], chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.