Factsheet for GSMUA_AchrUn_randomP19650_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 2
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G090080.1	Barley	cytosol	74.49	50.83
TraesCS5A01G549900.1	Wheat	cytosol	76.92	48.84
TraesCSU01G127700.1	Wheat	plastid	75.71	48.07
Zm00001d031899_P002	Maize	plastid	80.97	46.3
Os08t0562100-01	Rice	plastid	80.97	46.19
VIT_13s0019g05250.t01	Wine grape	plastid	81.38	46.0
TraesCS7D01G283900.1	Wheat	golgi	80.16	45.94
TraesCS7B01G197000.2	Wheat	mitochondrion, plastid	80.16	45.94
EES15165	Sorghum	plastid	79.76	45.92
PGSC0003DMT400079767	Potato	cytosol, plastid	81.38	45.89
Solyc11g007990.1.1	Tomato	plastid	81.78	45.7
HORVU7Hr1G060260.5	Barley	plastid	79.76	45.5
TraesCSU01G135100.2	Wheat	plastid	79.35	45.48
KXG25370	Sorghum	plastid	79.76	45.29
KRG92120	Soybean	plastid	77.73	45.28
CDY32993	Canola	plastid	80.16	44.8
Bra002660.1-P	Field mustard	plastid	80.16	44.8
KRH34668	Soybean	plastid	78.95	44.72
AT5G58330.1	Thale cress	plastid	80.16	44.7
Bra006772.1-P	Field mustard	plastid	80.16	44.59
CDY58562	Canola	plastid	80.16	44.59
CDX88669	Canola	plastid	80.16	44.59
CDY43863	Canola	plastid	79.76	44.47
CDY02811	Canola	plastid	79.35	44.34
Bra020374.1-P	Field mustard	plastid	79.35	44.24
CDY32711	Canola	plastid	79.35	44.24
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, golgi, peroxisome	86.23	43.74
Solyc03g071590.2.1	Tomato	plastid	79.76	42.18
GSMUA_Achr5P13450_001	Banana	cytosol	35.63	28.48
GSMUA_Achr4P21920_001	Banana	cytosol, endoplasmic reticulum, peroxisome	37.25	27.71
GSMUA_Achr5P03900_001	Banana	plasma membrane	36.44	27.11
GSMUA_AchrUn_...	Banana	nucleus, peroxisome, plastid	0.0	0.0

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:1.2.12	Gene3D:3.40.50.720	Gene3D:3.90.110.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0005975	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0016615	GO:GO:0016616	GO:GO:0055114	EnsemblPlantsGene:GSMUA_AchrUn_randomG19650_001	EnsemblPlants:GSMUA_AchrUn_randomP19650_001	EnsemblPlants:GSMUA_AchrUn_randomT19650_001
InterPro:IPR015955	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	UniProt:M0UAM4	InterPro:Malate_DH_type2
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	PANTHER:PTHR23382	PANTHER:PTHR23382:SF0	SUPFAM:SSF51735
SUPFAM:SSF56327	UniParc:UPI000295F459	SEG:seg	:	:	:

Description

Malate dehydrogenase [NADP], chloroplastic [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG19650_001]

Coordinates

chrchrUn_random:-:94765671..94768080

Molecular Weight (calculated)

27158.7 Da

IEP (calculated)

6.269

GRAVY (calculated)

-0.076

Length

247 amino acids

Sequence
(BLAST)

001: MEQADLLDIN GQIFAEQGKA LNAVASRNVK VLVVGNPCNT NALICLKNEP NISAKNFHAL TRLDVTRAKC QTFLGCELVA LKAGVFYDKV SNMTIRGNHL
101: MTQVPDFLNA KINGMPVTEV ITDIKWLKEE FTERVQKLGS VLIQKWGRSS AASTAVSTVD VIRSLVTPTP DGDWFFPGVY TTGNPYGIAD DIVFSMPCRL
201: KGDGDYELAK DVIIDNYLPD RIKKTEAELL AEKRCVAHLT GEGNAYC

Best Arabidopsis Sequence Match ( AT5G58330.2 )
(BLAST)

001: MAMAELSTPK TTSPFLNSSS RLRLSSKLHL SNHFRHLLLP PLHTTTPNSK ISCSVSQNQA PVAVQENGLV KTKKECYGVF CLTYDLKAEE ETRSWKKLIN
101: IAVSGAAGMI SNHLLFKLAS GEVFGPDQPI ALKLLGSERS IQALEGVAME LEDSLFPLLR EVDIGTDPNE VFQDVEWAIL IGAKPRGPGM ERADLLDING
201: QIFAEQGKAL NKAASPNVKV LVVGNPCNTN ALICLKNAPN IPAKNFHALT RLDENRAKCQ LALKAGVFYD KVSNMTIWGN HSTTQVPDFL NARINGLPVK
301: EVITDHKWLE EGFTESVQKR GGLLIQKWGR SSAASTAVSI VDAIKSLVTP TPEGDWFSTG VYTDGNPYGI EEGLVFSMPC RSKGDGDYEL VKDVEIDDYL
401: RQRIAKSEAE LLAEKRCVAH LTGEGIAYCD LGPVDTMLPG EV

Arabidopsis Description

Malate dehydrogenase [NADP], chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.