Factsheet for Bra020374.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra027469.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58330.1	Bra027469.1-P	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02811	Canola	plastid	98.87	99.09
CDY32711	Canola	plastid	98.87	98.87
Bra006772.1-P	Field mustard	plastid	97.07	96.85
Bra002660.1-P	Field mustard	plastid	95.94	96.15
AT5G58330.1	Thale cress	plastid	93.45	93.45
HORVU4Hr1G090080.1	Barley	cytosol	65.46	80.11
KRG92120	Soybean	plastid	76.3	79.72
GSMUA_AchrUn_...	Banana	cytosol	44.24	79.35
KRH34668	Soybean	plastid	77.88	79.13
VIT_13s0019g05250.t01	Wine grape	plastid	77.88	78.95
EES15165	Sorghum	plastid	75.62	78.09
PGSC0003DMT400079767	Potato	cytosol, plastid	76.75	77.63
Solyc11g007990.1.1	Tomato	plastid	77.43	77.6
Os08t0562100-01	Rice	plastid	75.85	77.6
Zm00001d031899_P002	Maize	plastid	75.39	77.31
KXG25370	Sorghum	plastid	74.72	76.09
TraesCSU01G135100.2	Wheat	plastid	73.59	75.64
TraesCS7B01G197000.2	Wheat	mitochondrion, plastid	73.36	75.41
TraesCS7D01G283900.1	Wheat	golgi	73.36	75.41
TraesCS5A01G549900.1	Wheat	cytosol	65.46	74.55
HORVU7Hr1G060260.5	Barley	plastid	72.69	74.36
TraesCSU01G127700.1	Wheat	plastid	64.79	73.78
Solyc03g071590.2.1	Tomato	plastid	76.98	73.02
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, golgi, peroxisome	76.52	69.61
GSMUA_AchrUn_...	Banana	nucleus, peroxisome, plastid	17.38	57.04
Bra027485.1-P	Field mustard	peroxisome	30.25	40.36
Bra030569.1-P	Field mustard	cytosol, golgi, peroxisome	30.02	40.06
Bra015314.1-P	Field mustard	peroxisome	29.12	38.86
Bra002797.1-P	Field mustard	endoplasmic reticulum	32.28	38.34

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00620+1.1.1.82	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37
KEGG:00710+1.1.1.37	KEGG:00710+1.1.1.82	KEGG:00720+1.1.1.37	MapMan:1.2.12	Gene3D:3.40.50.720	Gene3D:3.90.110.10
EnsemblPlantsGene:Bra020374	EnsemblPlants:Bra020374.1	EnsemblPlants:Bra020374.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975
GO:GO:0006108	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016615
GO:GO:0016616	GO:GO:0046554	GO:GO:0055114	InterPro:IPR015955	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N
InterPro:Lactate_DH/Glyco_Ohase_4_C	UniProt:M4DV31	InterPro:Malate_DH_AS	InterPro:Malate_DH_NADP-dep_pln	InterPro:Malate_DH_type2	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00056	PFAM:PF02866	ScanProsite:PS00068	PANTHER:PTHR23382	PANTHER:PTHR23382:SF0	SUPFAM:SSF51735
SUPFAM:SSF56327	TIGRFAMs:TIGR01757	TIGRFAMs:TIGR01759	UniParc:UPI0002543061	SEG:seg	:

Description

AT5G58330 (E=6e-225) | malate dehydrogenase (NADP), chloroplast, putative

Coordinates

chrA02:+:6455278..6457482

Molecular Weight (calculated)

48122.6 Da

IEP (calculated)

5.905

GRAVY (calculated)

-0.131

Length

443 amino acids

Sequence
(BLAST)

001: MAMTELSTPK TTSSFLNSSS RLSLSSKLHL SNQFRHLLLL PPLHTTSNSK ISCSVSQNNQ APVAVQDNGS VKTKKECYGV FCLTYDLKAE EETKSWKKMI
101: NIAVSGAAGM ISNHLLFKLA SGSVFGPDQP IALKLLGSER SIQALEGVAM ELEDSLFPLL REVDIGTDPY EVFQDVEWAL LIGAKPRGPG MERAALLDIN
201: GQIFAEQGKA LNAVASPNVK VLVVGNPCNT NALICLKNAP NIPAKNFHAL TRLDENRAKC QLALKAGVFY DKVSNMTIWG NHSTTQVPDF LNARINGQPV
301: KEVITDHKWL EEGFTESVQK RGGLLIQKWG RSSAASTAVS IVDAIKSLVT PTPEGDWFST GVYTNGNPYG IAEDLVFSMP CRSTGDGDYE LVKDVEFDDY
401: LRNRIAKSEA ELLAEKKCVA HLTGDGIAFC DLGPVDTMLP GEV

Best Arabidopsis Sequence Match ( AT5G58330.1 )
(BLAST)

001: MAMAELSTPK TTSPFLNSSS RLRLSSKLHL SNHFRHLLLP PLHTTTPNSK ISCSVSQNSQ APVAVQENGL VKTKKECYGV FCLTYDLKAE EETRSWKKLI
101: NIAVSGAAGM ISNHLLFKLA SGEVFGPDQP IALKLLGSER SIQALEGVAM ELEDSLFPLL REVDIGTDPN EVFQDVEWAI LIGAKPRGPG MERADLLDIN
201: GQIFAEQGKA LNKAASPNVK VLVVGNPCNT NALICLKNAP NIPAKNFHAL TRLDENRAKC QLALKAGVFY DKVSNMTIWG NHSTTQVPDF LNARINGLPV
301: KEVITDHKWL EEGFTESVQK RGGLLIQKWG RSSAASTAVS IVDAIKSLVT PTPEGDWFST GVYTDGNPYG IEEGLVFSMP CRSKGDGDYE LVKDVEIDDY
401: LRQRIAKSEA ELLAEKRCVA HLTGEGIAYC DLGPVDTMLP GEV

Arabidopsis Description

Malate dehydrogenase [NADP], chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H1E2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.