Factsheet for Bra002797.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 1
plastid 2
extracellular 3
endoplasmic reticulum 5
vacuole 3
plasma membrane 3
golgi 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	mitochondrion, plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32764	Canola	endoplasmic reticulum	99.46	99.46
AT5G56720.1	Thale cress	cytosol, endoplasmic reticulum	86.86	87.1
Solyc01g090710.2.1	Tomato	cytosol, unclear	65.95	73.65
VIT_15s0021g02410.t01	Wine grape	cytosol	65.42	73.49
GSMUA_Achr5P13450_001	Banana	cytosol	60.32	72.82
Bra027485.1-P	Field mustard	peroxisome	62.73	70.48
Bra030569.1-P	Field mustard	cytosol, golgi, peroxisome	62.73	70.48
Bra015314.1-P	Field mustard	peroxisome	61.66	69.28
KRH19181	Soybean	endoplasmic reticulum	67.83	67.83
PGSC0003DMT400066960	Potato	mitochondrion	54.42	60.06
VIT_01s0010g03100.t01	Wine grape	cytosol	6.97	46.43
Bra020374.1-P	Field mustard	plastid	38.34	32.28
Bra006772.1-P	Field mustard	plastid	38.34	32.21
Bra002660.1-P	Field mustard	plastid	38.07	32.13

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:1.4.2	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.1.1.3	EnsemblPlantsGene:Bra002797
EnsemblPlants:Bra002797.1	EnsemblPlants:Bra002797.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005975
GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0019752
GO:GO:0030060	GO:GO:0055114	InterPro:IPR015955	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N
InterPro:Lactate_DH/Glyco_Ohase_4_C	UniProt:M4CF15	InterPro:Malate_DH_AS	InterPro:Malate_DH_NAD-dep_euk	InterPro:Malate_DH_type2	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102	ScanProsite:PS00068	PANTHER:PTHR23382	PANTHER:PTHR23382:SF5
SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01758	TIGRFAMs:TIGR01759	TMHMM:TMhelix	UniParc:UPI0002544A33
SEG:seg	:	:	:	:	:

Description

AT5G56720 (E=4e-164) | malate dehydrogenase, cytosolic, putative

Coordinates

chrA10:+:7508024..7509249

Molecular Weight (calculated)

40824.4 Da

IEP (calculated)

6.177

GRAVY (calculated)

0.035

Length

373 amino acids

Sequence
(BLAST)

001: MEVVGGEVDY TFVIQKSLVL LLCVVLSWKM IVYMCNLLKI EKEPIRVLVT GAAGNIGYAI APMIARGMML GQDQPMILHL LDIEPASKSL EAVKMELQDS
101: AFPLLHGVFA TTNIDEACKG VNIAIMIGGF ARKEGMERRD VMSKNAVIFK AQASALERYA SDDCKVLVVA NPANTNALIL KEFAPSIPEE NITCLTRLDH
201: NRAQARLAEK LSVPVSSVKN VIVWGNHSST QYPDSNHATV STKTGDQPVR ELLVADQKWL KNEFSTEVQQ RGAEILRARR QSSALSAASA ACDHIHDWFL
301: GTPKGSWVSM GVCSDGSYGI APGLVYSFPV ICEKGSWKIV QGLSVDEFSR EKMDDSAREL AEEKALAYSC LNV

Best Arabidopsis Sequence Match ( AT5G56720.1 )
(BLAST)

001: MEFVGEEINY TFVIQKVLVL LFCVGLSWKM IIYMCNLLNI EKDPIRVLIT GAAGNIGYAI APMIARGIML GPDQPMILHL LDIEPASSSL EAVKMELQDS
101: AFPLLKGVIA TTNVVEACKD VNIVIMIGGF PRIAGMERKD VMSKNVVIYK AQASALERYA SDDCKVLVVA NPANTNALIL KEFAPSIPEE NITCLTRLDH
201: NRALAQLADK LSVPVSSVKN VIVWGNHSST QYPDTNHATV STKTGDRPLK ELVTDHNWLK NEFIVEVQQR GAAVLRARKQ SSAFSAAGAA CDHIRDWFLG
301: TPKGTWVSMG VCSDGSYGIP PGLVYSFPVI CEKGSWKIVQ GLSIDEFSRE KMDDSARELA EEKDLAYSCL NV

Arabidopsis Description

Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UAN5]
SUBAcon: [endoplasmic reticulum,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.