Factsheet for VIT_15s0021g02410.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	peroxisome
Plant-mPloc:	mitochondrion, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g090710.2.1	Tomato	cytosol, unclear	87.35	86.83
VIT_07s0005g03360.t01	Wine grape	extracellular	84.34	84.34
GSMUA_Achr5P13450_001	Banana	cytosol	76.2	81.88
VIT_07s0005g03350.t01	Wine grape	plastid	84.34	76.71
KRH19181	Soybean	endoplasmic reticulum	84.34	75.07
PGSC0003DMT400066960	Potato	mitochondrion	73.49	72.19
AT5G56720.1	Thale cress	cytosol, endoplasmic reticulum	74.1	66.13
CDY32764	Canola	endoplasmic reticulum	73.8	65.68
Bra002797.1-P	Field mustard	endoplasmic reticulum	73.49	65.42
CDY32878	Canola	endoplasmic reticulum, golgi, plasma membrane	73.19	65.15
VIT_01s0010g03100.t01	Wine grape	cytosol	9.64	57.14
VIT_01s0010g03090.t01	Wine grape	plastid	24.1	55.56
VIT_13s0019g05250.t01	Wine grape	plastid	42.47	32.27

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:1.4.2	EntrezGene:100256452	wikigene:100256452	Gene3D:3.40.50.720	Gene3D:3.90.110.10
MapMan:5.1.1.3	EMBL:AM483925	ProteinID:CAN77649	ProteinID:CAN77649.1	ProteinID:CBI16608	ProteinID:CBI16608.3
UniProt:D7SLT0	EMBL:FN594952	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006107
GO:GO:0006108	GO:GO:0006139	GO:GO:0006734	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0019752
GO:GO:0030060	GO:GO:0055114	InterPro:IPR015955	InterPro:L-lactate/malate_DH	EntrezGene:LOC100256452	wikigene:LOC100256452
InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS	InterPro:Malate_DH_NAD-dep_euk	InterPro:Malate_DH_type2
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102	ScanProsite:PS00068	PANTHER:PTHR23382
PANTHER:PTHR23382:SF7	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGR:TC55437	TIGRFAMs:TIGR01758	TIGRFAMs:TIGR01759
UniParc:UPI00015C9B85	ArrayExpress:VIT_15s0021g02410	EnsemblPlantsGene:VIT_15s0021g02410	EnsemblPlants:VIT_15s0021g02410.t01	unigene:Vvi.10357	RefSeq:XP_002277543
RefSeq:XP_002277543.1	SEG:seg	:	:	:	:

Description

Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:D7SLT0]

Coordinates

chr15:-:13412183..13415839

Molecular Weight (calculated)

35864.5 Da

IEP (calculated)

6.859

GRAVY (calculated)

0.013

Length

332 amino acids

Sequence
(BLAST)

001: MAKDAVRVLV TGAAGQIGYA LVPMIARGLM LGPDQPVILH MLDIEPAAEA LNGVKMELID AAFPLLRGVV ATTDAIEACK DVNIAVMVGG FPRKEGMERK
101: DMMKKNVSIY KAQASALEQH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNVTCLTRLD HNRALGQISE KLFVHVGDVK NAIIWGNHSS TQYPDVNHAT
201: VSTCNGEKPV RELIADDNWI NTEFITTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVL GTPKGAWVSM GVYSDGSYGI QPGIIYSFPV TCEKGEWSIV
301: QGLKIDEFSR GKMDATAKEL MEEKALAYSC LN

Best Arabidopsis Sequence Match ( AT1G04410.1 )
(BLAST)

001: MAKEPVRVLV TGAAGQIGYA LVPMIARGIM LGADQPVILH MLDIPPAAEA LNGVKMELID AAFPLLKGVV ATTDAVEGCT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQAAALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNISCLTRLD HNRALGQISE RLSVPVSDVK NVIIWGNHSS SQYPDVNHAK
201: VQTSSGEKPV RELVKDDAWL DGEFISTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVL GTPEGTFVSM GVYSDGSYSV PSGLIYSFPV TCRNGDWSIV
301: QGLPIDEVSR KKMDLTAEEL KEEKDLAYSC LS

Arabidopsis Description

MDH1Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178W4H0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.