Factsheet for AT5G56720.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

cytosol 3
plastid 2
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	mitochondrion, plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002797.1-P	Field mustard	endoplasmic reticulum	87.1	86.86
CDY32764	Canola	endoplasmic reticulum	87.1	86.86
CDY32878	Canola	endoplasmic reticulum, golgi, plasma membrane	87.1	86.86
Solyc01g090710.2.1	Tomato	cytosol, unclear	66.67	74.25
VIT_15s0021g02410.t01	Wine grape	cytosol	66.13	74.1
GSMUA_Achr5P13450_001	Banana	cytosol	61.02	73.46
AT5G43330.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	64.52	72.29
AT1G04410.1	Thale cress	peroxisome	64.25	71.99
KRH19181	Soybean	endoplasmic reticulum	69.89	69.71
PGSC0003DMT400066960	Potato	mitochondrion	54.57	60.06
VIT_01s0010g03100.t01	Wine grape	cytosol	6.72	44.64
AT5G58330.1	Thale cress	plastid	40.32	33.86

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:1.4.2	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.1.1.3	EntrezGene:835773
UniProt:A0A178UAN5	UniProt:A0A2H1ZE98	ProteinID:AED96800.2	ArrayExpress:AT5G56720	EnsemblPlantsGene:AT5G56720	RefSeq:AT5G56720
TAIR:AT5G56720	RefSeq:AT5G56720-TAIR-G	EnsemblPlants:AT5G56720.1	TAIR:AT5G56720.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0006091
GO:GO:0006099	GO:GO:0006107	GO:GO:0006108	GO:GO:0006139	GO:GO:0006734	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0016615
GO:GO:0016616	GO:GO:0019752	GO:GO:0030060	GO:GO:0055114	InterPro:IPR015955	InterPro:L-lactate/malate_DH
InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS	InterPro:Malate_DH_NAD-dep_euk	InterPro:Malate_DH_type2
InterPro:NAD(P)-bd_dom_sf	RefSeq:NP_200483.2	ProteinID:OAO90227.1	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102
PO:PO:0000037	PO:PO:0000230	PO:PO:0007103	PO:PO:0007611	PO:PO:0007616	PO:PO:0009005
PO:PO:0009025	PO:PO:0009030	PO:PO:0009046	PO:PO:0020100	PO:PO:0020137	ScanProsite:PS00068
PANTHER:PTHR23382	PANTHER:PTHR23382:SF5	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01758	TIGRFAMs:TIGR01759
TMHMM:TMhelix	UniParc:UPI0007DED059	:	:	:	:

Description

Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UAN5]

Coordinates

chr5:+:22945419..22946807

Molecular Weight (calculated)

40781.6 Da

IEP (calculated)

5.706

GRAVY (calculated)

0.111

Length

372 amino acids

Sequence
(BLAST)

001: MEFVGEEINY TFVIQKVLVL LFCVGLSWKM IIYMCNLLNI EKDPIRVLIT GAAGNIGYAI APMIARGIML GPDQPMILHL LDIEPASSSL EAVKMELQDS
101: AFPLLKGVIA TTNVVEACKD VNIVIMIGGF PRIAGMERKD VMSKNVVIYK AQASALERYA SDDCKVLVVA NPANTNALIL KEFAPSIPEE NITCLTRLDH
201: NRALAQLADK LSVPVSSVKN VIVWGNHSST QYPDTNHATV STKTGDRPLK ELVTDHNWLK NEFIVEVQQR GAAVLRARKQ SSAFSAAGAA CDHIRDWFLG
301: TPKGTWVSMG VCSDGSYGIP PGLVYSFPVI CEKGSWKIVQ GLSIDEFSRE KMDDSARELA EEKDLAYSCL NV

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.