Factsheet for VIT_01s0010g03100.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
mitochondrion 3
peroxisome 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0005g03360.t01	Wine grape	extracellular	67.86	11.45
VIT_07s0005g03350.t01	Wine grape	plastid	67.86	10.41
Solyc01g090710.2.1	Tomato	cytosol, unclear	60.71	10.18
PGSC0003DMT400066960	Potato	mitochondrion	60.71	10.06
VIT_15s0021g02410.t01	Wine grape	cytosol	57.14	9.64
GSMUA_Achr5P13450_001	Banana	cytosol	50.0	9.06
Bra002797.1-P	Field mustard	endoplasmic reticulum	46.43	6.97
CDY32764	Canola	endoplasmic reticulum	46.43	6.97
CDY32878	Canola	endoplasmic reticulum, golgi, plasma membrane	46.43	6.97
AT5G56720.1	Thale cress	cytosol, endoplasmic reticulum	44.64	6.72
VIT_13s0019g05250.t01	Wine grape	plastid	37.5	4.81
VIT_01s0010g03090.t01	Wine grape	plastid	3.57	1.39

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	Gene3D:3.90.110.10	MapMan:35.2	ProteinID:CCB51273	ProteinID:CCB51273.1	UniProt:F6HG80
EMBL:FN595754	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006107	GO:GO:0006108
GO:GO:0006139	GO:GO:0006734	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016615
GO:GO:0016616	GO:GO:0030060	GO:GO:0055114	InterPro:IPR015955	InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_type2
PANTHER:PTHR23382	PANTHER:PTHR23382:SF7	SUPFAM:SSF56327	UniParc:UPI000210A153	ArrayExpress:VIT_01s0010g03100	EnsemblPlantsGene:VIT_01s0010g03100
EnsemblPlants:VIT_01s0010g03100.t01	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:20144272..20144503

Molecular Weight (calculated)

6325.6 Da

IEP (calculated)

9.021

GRAVY (calculated)

-0.302

Length

56 amino acids

Sequence
(BLAST)

1: MFKYPMLRML SYGGNHSSIQ YPDVTHATLK TPAGEKPVRG LVGDDTWLNR EFIITA

Best Arabidopsis Sequence Match ( AT5G43330.1 )
(BLAST)

001: MAKEPVRVLV TGAAGQIGYA LVPMIARGIM LGADQPVILH MLDIPFAAEA LNGVKMELVD AAFPLLKGVV ATTDAVEACT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQASALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNITCLTRLD HNRALGQVSE RLSVPVSDVK NVIIWGNHSS TQYPDVNHAT
201: VKTSVGEKPV RELVKNDEWL NGEFISTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVV GTPEGTFVSM GVYSDGSYNV PAGLIYSFPV TCRNGEWTIV
301: QGLPIDDASR KKMDLTAEEL KEEKDLAYSC LS

Arabidopsis Description

MDH2Malate dehydrogenase 2, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:P57106]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.