Factsheet for VIT_07s0005g03360.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 2
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	peroxisome
Plant-mPloc:	mitochondrion, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

extracellular: 27664331

msms PMID: 27664331 doi

P Pérez-Bermúdez, J Blesa, JM Soriano, A Marcilla

Departament de Biologia Vegetal, Facultat de Farmàcia, Universitat de València, Burjassot, Valencia, Spain., Grupo de Ciencias de la Alimentación Basada en la Evidencia y Experimentación (CiAlBEx), Instituto de Ciencias de los Materiales, Parque Científico, Universitat de València, Paterna, Spain; Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain., Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain; Àrea de Parasitologia, Departament de Farmàcia i Tecnologia Farmacèutica i Parasitologia, Universitat de València, Burjassot, Valencia, Spain. Electronic address: antonio.marcilla@uv.es.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31702	Soybean	endoplasmic reticulum	93.07	94.21
KRH69119	Soybean	mitochondrion, nucleus	93.98	93.98
Solyc09g090140.2.1	Tomato	plastid	93.07	93.07
GSMUA_Achr4P21920_001	Banana	cytosol, endoplasmic reticulum, peroxisome	93.07	93.07
PGSC0003DMT400044217	Potato	cytosol	92.77	92.77
EER94077	Sorghum	peroxisome	92.47	92.47
Zm00001d032695_P001	Maize	plasma membrane	92.17	92.17
CDX98109	Canola	cytosol, endoplasmic reticulum, peroxisome	60.24	91.32
AT5G43330.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	91.27	91.27
GSMUA_Achr5P03900_001	Banana	plasma membrane	91.27	91.27
CDY43609	Canola	peroxisome	90.96	90.96
VIT_07s0005g03350.t01	Wine grape	plastid	100.0	90.96
CDY32953	Canola	peroxisome	90.66	90.66
Os10t0478200-01	Rice	extracellular	90.66	90.66
Bra027485.1-P	Field mustard	peroxisome	90.66	90.66
HORVU1Hr1G041250.5	Barley	extracellular	90.36	90.09
TraesCS1D01G153900.1	Wheat	golgi, plastid	90.36	90.09
TraesCS1B01G172400.1	Wheat	golgi	90.36	90.09
CDY18230	Canola	peroxisome	90.06	90.06
CDY15504	Canola	cytosol, endoplasmic reticulum, peroxisome	90.06	90.06
CDY67454	Canola	cytosol, endoplasmic reticulum, peroxisome	89.76	89.76
AT1G04410.1	Thale cress	peroxisome	89.76	89.76
CDX89826	Canola	peroxisome	89.76	89.76
Zm00001d014030_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	84.34	89.74
Bra030569.1-P	Field mustard	cytosol, golgi, peroxisome	89.46	89.46
TraesCS1A01G155200.1	Wheat	endoplasmic reticulum	87.95	89.02
Bra015314.1-P	Field mustard	peroxisome	88.55	88.55
VIT_15s0021g02410.t01	Wine grape	cytosol	84.34	84.34
VIT_01s0010g03100.t01	Wine grape	cytosol	11.45	67.86
VIT_01s0010g03090.t01	Wine grape	plastid	25.9	59.72
VIT_13s0019g05250.t01	Wine grape	plastid	40.66	30.89

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:1.4.2	EntrezGene:100248145	wikigene:100248145	EntrezGene:100253273	wikigene:100253273
Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.1.1.3	ProteinID:CBI37115	ProteinID:CBI37115.3	UniProt:D7FBC0
EMBL:FN596502	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006107	GO:GO:0006108
GO:GO:0006139	GO:GO:0006734	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0016615	GO:GO:0016616	GO:GO:0019752	GO:GO:0030060	GO:GO:0055114	InterPro:IPR015955
InterPro:L-lactate/malate_DH	EntrezGene:LOC100248145	wikigene:LOC100248145	EntrezGene:LOC100253273	wikigene:LOC100253273	InterPro:Lactate/malate_DH_C
InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS	InterPro:Malate_DH_NAD-dep_euk	InterPro:Malate_DH_type2	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102	ScanProsite:PS00068	PANTHER:PTHR23382	PANTHER:PTHR23382:SF7
SUPFAM:SSF51735	SUPFAM:SSF56327	TIGR:TC52098	TIGRFAMs:TIGR01758	TIGRFAMs:TIGR01759	UniParc:UPI00015CAC35
ArrayExpress:VIT_07s0005g03360	EnsemblPlantsGene:VIT_07s0005g03360	EnsemblPlants:VIT_07s0005g03360.t01	unigene:Vvi.7946	RefSeq:XP_002278636	RefSeq:XP_002278636.2
RefSeq:XP_002278712.1	SEG:seg	:	:	:	:

Description

Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:D7FBC0]

Coordinates

chr7:-:6231151..6235245

Molecular Weight (calculated)

35506.9 Da

IEP (calculated)

6.620

GRAVY (calculated)

0.079

Length

332 amino acids

Sequence
(BLAST)

001: MAKEPVRVLV TGAAGQIGYA LVPMIARGVM LGADQPVILH MLDIPPAAEA LNGVKMELVD AAFPLLKGVV ATTDVVEACT GVNIAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQASALENH AAANCKVLVV ANPANTNALI LKEFAPSIPE KNISCLTRLD HNRALGQVSE RLNVQVSDVK NVIIWGNHSS TQYPDVNHAT
201: VKTPAGEKPV RGLVGDDAWL NGEFITTVQQ RGAAIIKARK LSSALSAASA ACDHIRDWVL GTPEGTWVSM GVYSDGSYNV PAGLIYSFPV TCCAGEWKIV
301: QGLHIDEFSR KKLDLTAQEL SEEKELAYSC LS

Best Arabidopsis Sequence Match ( AT5G43330.1 )
(BLAST)

001: MAKEPVRVLV TGAAGQIGYA LVPMIARGIM LGADQPVILH MLDIPFAAEA LNGVKMELVD AAFPLLKGVV ATTDAVEACT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQASALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNITCLTRLD HNRALGQVSE RLSVPVSDVK NVIIWGNHSS TQYPDVNHAT
201: VKTSVGEKPV RELVKNDEWL NGEFISTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVV GTPEGTFVSM GVYSDGSYNV PAGLIYSFPV TCRNGEWTIV
301: QGLPIDDASR KKMDLTAEEL KEEKDLAYSC LS

Arabidopsis Description

MDH2Malate dehydrogenase 2, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:P57106]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.