Factsheet for TraesCS1B01G172400.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
peroxisome 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, peroxisome, vacuole
iPSORT:	secretory
MultiLoc:	peroxisome
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	vacuole

extracellular: 19786127
plastid: 22160430
golgi: 23128297
golgi: 25769308
unclear: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 19786127 doi

FJ Kong, A Oyanagi, S Komatsu

National Institute of Crop Science, Tsukuba 305-8518, Japan.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G325600.1
TraesCS1B01G338800.1
TraesCS1B01G339000.1
TraesCS1D01G327500.1
TraesCS7A01G562100.1
TraesCS7D01G001000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04410.1	TraesCS1A01G325600.1	AT5G42980.1	15352244
AT1G04410.1	TraesCS1B01G338800.1	AT5G42980.1	15352244
AT1G04410.1	TraesCS1B01G339000.1	AT5G42980.1	15352244
AT1G04410.1	TraesCS1D01G327500.1	AT5G42980.1	15352244
AT1G04410.1	TraesCS7A01G562100.1	AT5G42980.1	15352244
AT1G04410.1	TraesCS7D01G001000.1	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G153900.1	Wheat	golgi, plastid	99.1	99.1
TraesCS1A01G155200.1	Wheat	endoplasmic reticulum	96.4	97.87
HORVU1Hr1G041250.5	Barley	extracellular	97.3	97.3
Zm00001d032695_P001	Maize	plasma membrane	93.09	93.37
EER94077	Sorghum	peroxisome	93.09	93.37
Os10t0478200-01	Rice	extracellular	92.79	93.07
Solyc09g090140.2.1	Tomato	plastid	91.29	91.57
PGSC0003DMT400044217	Potato	cytosol	90.69	90.96
CDX98109	Canola	cytosol, endoplasmic reticulum, peroxisome	59.46	90.41
Bra027485.1-P	Field mustard	peroxisome	90.09	90.36
VIT_07s0005g03360.t01	Wine grape	extracellular	90.09	90.36
CDY32953	Canola	peroxisome	90.09	90.36
Zm00001d014030_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	84.38	90.06
AT5G43330.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	89.79	90.06
CDY43609	Canola	peroxisome	89.79	90.06
CDY18230	Canola	peroxisome	89.79	90.06
KRH31702	Soybean	endoplasmic reticulum	88.59	89.94
GSMUA_Achr4P21920_001	Banana	cytosol, endoplasmic reticulum, peroxisome	89.49	89.76
CDY15504	Canola	cytosol, endoplasmic reticulum, peroxisome	89.49	89.76
CDX89826	Canola	peroxisome	89.49	89.76
CDY67454	Canola	cytosol, endoplasmic reticulum, peroxisome	89.19	89.46
AT1G04410.1	Thale cress	peroxisome	89.19	89.46
GSMUA_Achr5P03900_001	Banana	plasma membrane	88.89	89.16
KRH69119	Soybean	mitochondrion, nucleus	88.89	89.16
Bra030569.1-P	Field mustard	cytosol, golgi, peroxisome	88.89	89.16
Bra015314.1-P	Field mustard	peroxisome	88.29	88.55
VIT_07s0005g03350.t01	Wine grape	plastid	90.09	82.19
TraesCS7B01G197000.2	Wheat	mitochondrion, plastid	39.64	30.63

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:1.4.2	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.1.1.3	GO:GO:0003674
GO:GO:0003824	GO:GO:0005975	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0019752	GO:GO:0030060	GO:GO:0055114
InterPro:IPR015955	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS
InterPro:Malate_DH_NAD-dep_euk	InterPro:Malate_DH_type2	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102
ScanProsite:PS00068	PANTHER:PTHR23382	PANTHER:PTHR23382:SF7	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01758
TIGRFAMs:TIGR01759	EnsemblPlantsGene:TraesCS1B01G172400	EnsemblPlants:TraesCS1B01G172400.1	TIGR:cd01336	SEG:seg	:

Description

No Description!

Coordinates

chr1B:+:307425374..307428399

Molecular Weight (calculated)

35487.9 Da

IEP (calculated)

5.977

GRAVY (calculated)

0.098

Length

333 amino acids

Sequence
(BLAST)

001: MAAKEPMRVL VTGAAGQIGY ALVPMIARGV MLGADQPVIL HMLDIEFAAE ALKGVKMELI DAAFPLLKGV VATTDVVEAC TGVNVAVMVG GFPRKEGMER
101: KDVMTKNVSI YKAQASALEA HAAPNCKVLV VANPANTNAL ILKEFAPSIP EKNISCLTRL DHNRALGQIS ERLGVQVSDV KNAIIWGNHS SSQYPDVNHA
201: TVKTPSGEKP VRELVQDDEW LNGEFIATVQ QRGAAIIKAR KLSSALSAAS SACDHIRDWV LGTAEGTFVS MGVYSDGSYG VPAGLIYSFP VTCSGGEWTI
301: VQGLPIDEFS RKKMDATAQE LSEEKALAYS CLA

Best Arabidopsis Sequence Match ( AT5G43330.1 )
(BLAST)

001: MAKEPVRVLV TGAAGQIGYA LVPMIARGIM LGADQPVILH MLDIPFAAEA LNGVKMELVD AAFPLLKGVV ATTDAVEACT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQASALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNITCLTRLD HNRALGQVSE RLSVPVSDVK NVIIWGNHSS TQYPDVNHAT
201: VKTSVGEKPV RELVKNDEWL NGEFISTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVV GTPEGTFVSM GVYSDGSYNV PAGLIYSFPV TCRNGEWTIV
301: QGLPIDDASR KKMDLTAEEL KEEKDLAYSC LS

Arabidopsis Description

MDH2Malate dehydrogenase 2, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:P57106]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.