Factsheet for TraesCS1A01G155200.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, secretory
iPSORT:	secretory
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G325600.1
TraesCS1B01G338800.1
TraesCS1B01G339000.1
TraesCS1D01G327500.1
TraesCS7A01G562100.1
TraesCS7D01G001000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04410.1	TraesCS1A01G325600.1	AT5G42980.1	15352244
AT1G04410.1	TraesCS1B01G338800.1	AT5G42980.1	15352244
AT1G04410.1	TraesCS1B01G339000.1	AT5G42980.1	15352244
AT1G04410.1	TraesCS1D01G327500.1	AT5G42980.1	15352244
AT1G04410.1	TraesCS7A01G562100.1	AT5G42980.1	15352244
AT1G04410.1	TraesCS7D01G001000.1	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G153900.1	Wheat	golgi, plastid	97.87	96.4
TraesCS1B01G172400.1	Wheat	golgi	97.87	96.4
HORVU1Hr1G041250.5	Barley	extracellular	95.12	93.69
EER94077	Sorghum	peroxisome	92.07	90.96
Zm00001d032695_P001	Maize	plasma membrane	91.77	90.66
Os10t0478200-01	Rice	extracellular	91.46	90.36
Solyc09g090140.2.1	Tomato	plastid	90.55	89.46
PGSC0003DMT400044217	Potato	cytosol	89.94	88.86
Bra027485.1-P	Field mustard	peroxisome	89.33	88.25
CDY32953	Canola	peroxisome	89.33	88.25
VIT_07s0005g03360.t01	Wine grape	extracellular	89.02	87.95
CDY43609	Canola	peroxisome	89.02	87.95
KRH31702	Soybean	endoplasmic reticulum	87.8	87.8
AT5G43330.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	88.72	87.65
GSMUA_Achr4P21920_001	Banana	cytosol, endoplasmic reticulum, peroxisome	88.72	87.65
CDY18230	Canola	peroxisome	88.72	87.65
CDY15504	Canola	cytosol, endoplasmic reticulum, peroxisome	88.41	87.35
CDX89826	Canola	peroxisome	88.41	87.35
CDX98109	Canola	cytosol, endoplasmic reticulum, peroxisome	58.23	87.21
Zm00001d014030_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	82.93	87.18
GSMUA_Achr5P03900_001	Banana	plasma membrane	88.11	87.05
CDY67454	Canola	cytosol, endoplasmic reticulum, peroxisome	88.11	87.05
KRH69119	Soybean	mitochondrion, nucleus	88.11	87.05
AT1G04410.1	Thale cress	peroxisome	88.11	87.05
Bra030569.1-P	Field mustard	cytosol, golgi, peroxisome	87.8	86.75
Bra015314.1-P	Field mustard	peroxisome	87.2	86.14
VIT_07s0005g03350.t01	Wine grape	plastid	89.02	80.0
TraesCS5A01G549900.1	Wheat	cytosol	38.72	32.65

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:1.4.2	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.1.1.3	GO:GO:0003674
GO:GO:0003824	GO:GO:0005975	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0019752	GO:GO:0030060	GO:GO:0055114
InterPro:IPR015955	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS
InterPro:Malate_DH_NAD-dep_euk	InterPro:Malate_DH_type2	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102
ScanProsite:PS00068	PANTHER:PTHR23382	PANTHER:PTHR23382:SF7	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01758
TIGRFAMs:TIGR01759	EnsemblPlantsGene:TraesCS1A01G155200	EnsemblPlants:TraesCS1A01G155200.1	TIGR:cd01336	SEG:seg	:

Description

No Description!

Coordinates

chr1A:+:272611172..272613645

Molecular Weight (calculated)

35076.5 Da

IEP (calculated)

6.253

GRAVY (calculated)

0.106

Length

328 amino acids

Sequence
(BLAST)

001: MIKSGGMVLV RQIGYALVPM IARGVMLGAD QPVILHMLDI EFAAEALKGV KMELIDAAFP LLKGVVATTD VVEACTGVNV AVMVGGFPRK EGMERKDVMT
101: KNVSIYKAQA SALEAHAAPN CKVLVVANPA NTNALILKEF APSIPEKNIS CLTRLDHNRA LGQISERLGV QVSDVKNAII WGNHSSSQYP DVNHATVKTP
201: SGEKPVRELV QDDEWLNGEF IATVQQRGAA IIKARKLSSA LSAASSACDH IRDWVLGTAE GTFVSMGVYS DGSYGVPAGL IYSFPVTCSG GEWTIVQGLP
301: IDEFSRKKMD ATAQELSEEK ALAYSCLA

Best Arabidopsis Sequence Match ( AT5G43330.1 )
(BLAST)

001: MAKEPVRVLV TGAAGQIGYA LVPMIARGIM LGADQPVILH MLDIPFAAEA LNGVKMELVD AAFPLLKGVV ATTDAVEACT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQASALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNITCLTRLD HNRALGQVSE RLSVPVSDVK NVIIWGNHSS TQYPDVNHAT
201: VKTSVGEKPV RELVKNDEWL NGEFISTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVV GTPEGTFVSM GVYSDGSYNV PAGLIYSFPV TCRNGEWTIV
301: QGLPIDDASR KKMDLTAEEL KEEKDLAYSC LS

Arabidopsis Description

MDH2Malate dehydrogenase 2, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:P57106]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.