CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 2
peroxisome 1
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	peroxisome
Plant-mPloc:	mitochondrion, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

endoplasmic reticulum: 27224218
nucleus: 27291164
mitochondrion: 27780359
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31702	Soybean	endoplasmic reticulum	97.29	98.48
VIT_07s0005g03360.t01	Wine grape	extracellular	93.98	93.98
Solyc09g090140.2.1	Tomato	plastid	93.67	93.67
PGSC0003DMT400044217	Potato	cytosol	93.67	93.67
GSMUA_Achr4P21920_001	Banana	cytosol, endoplasmic reticulum, peroxisome	92.17	92.17
EER94077	Sorghum	peroxisome	91.57	91.57
GSMUA_Achr5P03900_001	Banana	plasma membrane	90.66	90.66
CDX98109	Canola	cytosol, endoplasmic reticulum, peroxisome	59.64	90.41
CDY43609	Canola	peroxisome	90.36	90.36
AT5G43330.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	90.06	90.06
Zm00001d032695_P001	Maize	plasma membrane	90.06	90.06
CDY32953	Canola	peroxisome	90.06	90.06
Bra027485.1-P	Field mustard	peroxisome	90.06	90.06
CDX89826	Canola	peroxisome	90.06	90.06
CDY18230	Canola	peroxisome	89.76	89.76
CDY15504	Canola	cytosol, endoplasmic reticulum, peroxisome	89.76	89.76
TraesCS1D01G153900.1	Wheat	golgi, plastid	89.76	89.49
AT1G04410.1	Thale cress	peroxisome	89.46	89.46
CDY67454	Canola	cytosol, endoplasmic reticulum, peroxisome	89.46	89.46
Os10t0478200-01	Rice	extracellular	89.46	89.46
Bra030569.1-P	Field mustard	cytosol, golgi, peroxisome	89.16	89.16
TraesCS1B01G172400.1	Wheat	golgi	89.16	88.89
HORVU1Hr1G041250.5	Barley	extracellular	89.16	88.89
Bra015314.1-P	Field mustard	peroxisome	88.86	88.86
Zm00001d014030_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	83.13	88.46
TraesCS1A01G155200.1	Wheat	endoplasmic reticulum	87.05	88.11
VIT_07s0005g03350.t01	Wine grape	plastid	93.98	85.48
KRH19181	Soybean	endoplasmic reticulum	83.73	74.53
KRH34668	Soybean	plastid	41.27	31.42
KRG92120	Soybean	plastid	39.16	30.66

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:1.4.2	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.1.1.3	UniProt:A0A0R4J2L9
EMBL:ACUP02000689	EnsemblPlantsGene:GLYMA_02G005500	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0006091
GO:GO:0006099	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0016615	GO:GO:0016616	GO:GO:0016740	GO:GO:0016746	GO:GO:0019752	GO:GO:0030060
GO:GO:0055114	InterPro:IPR015955	EnsemblPlants:KRH69119	ProteinID:KRH69119	ProteinID:KRH69119.1	InterPro:L-lactate/malate_DH
InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS	InterPro:Malate_DH_NAD-dep_euk	InterPro:Malate_DH_type2
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102	ScanProsite:PS00068	PANTHER:PTHR23382
PANTHER:PTHR23382:SF7	MetaCyc:PWY-1622	MetaCyc:PWY-5392	MetaCyc:PWY-561	MetaCyc:PWY-5690	MetaCyc:PWY-5913
MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7115	MetaCyc:PWY-7383	SUPFAM:SSF51735	SUPFAM:SSF56327
TIGRFAMs:TIGR01758	TIGRFAMs:TIGR01759	UniParc:UPI000189DA4C	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:597924..601924

Molecular Weight (calculated)

35469.8 Da

IEP (calculated)

6.250

GRAVY (calculated)

0.101

Length

332 amino acids

Sequence
(BLAST)

001: MAKDPVRVLV TGAAGQIGYA LVPMIARGVM LGPDQPVILH MLDIPPAAES LNGVKMELVD AAFPLLKGVV ATTDVVEACT GVNIAVMVGG FPRKEGMERK
101: DVMTKNVSIY KSQASALEKH AAANCKVLVV ANPANTNALI LKEFAPSIPE KNISCLTRLD HNRALGQISE RLTVQVSDVK NVIIWGNHSS TQYPDVNHAT
201: VATSAGEKPV RELIADDAWL NGEFITTVQQ RGAAIIKARK LSSALSAASA ACDHIRDWVL GTPQGTWVSM GVYSDGSYNV PAGLIYSFPV TCANGEWAIV
301: QGLSIDEFSR KKLDLTAEEL SEEKALAYSC LN

Best Arabidopsis Sequence Match ( AT1G04410.1 )
(BLAST)

001: MAKEPVRVLV TGAAGQIGYA LVPMIARGIM LGADQPVILH MLDIPPAAEA LNGVKMELID AAFPLLKGVV ATTDAVEGCT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQAAALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNISCLTRLD HNRALGQISE RLSVPVSDVK NVIIWGNHSS SQYPDVNHAK
201: VQTSSGEKPV RELVKDDAWL DGEFISTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVL GTPEGTFVSM GVYSDGSYSV PSGLIYSFPV TCRNGDWSIV
301: QGLPIDEVSR KKMDLTAEEL KEEKDLAYSC LS

Arabidopsis Description

MDH1Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178W4H0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.