CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, peroxisome
Any Predictor:	cytosol, endoplasmic reticulum, peroxisome
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32953	Canola	peroxisome	100.0	65.96
CDY43609	Canola	peroxisome	100.0	65.96
Zm00001d014030_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	91.78	64.42
CDY15504	Canola	cytosol, endoplasmic reticulum, peroxisome	96.8	63.86
CDX89826	Canola	peroxisome	95.89	63.25
AT5G43330.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	95.89	63.25
CDY18230	Canola	peroxisome	95.43	62.95
CDY67454	Canola	cytosol, endoplasmic reticulum, peroxisome	95.43	62.95
Solyc09g090140.2.1	Tomato	plastid	94.06	62.05
PGSC0003DMT400044217	Potato	cytosol	94.06	62.05
EER94077	Sorghum	peroxisome	93.15	61.45
Zm00001d032695_P001	Maize	plasma membrane	93.15	61.45
VIT_07s0005g03360.t01	Wine grape	extracellular	91.32	60.24
TraesCS1D01G153900.1	Wheat	golgi, plastid	91.32	60.06
GSMUA_Achr4P21920_001	Banana	cytosol, endoplasmic reticulum, peroxisome	90.87	59.94
GSMUA_Achr5P03900_001	Banana	plasma membrane	90.87	59.94
HORVU1Hr1G041250.5	Barley	extracellular	90.87	59.76
KRH69119	Soybean	mitochondrion, nucleus	90.41	59.64
TraesCS1B01G172400.1	Wheat	golgi	90.41	59.46
Os10t0478200-01	Rice	extracellular	89.95	59.34
KRH31702	Soybean	endoplasmic reticulum	88.58	59.15
TraesCS1A01G155200.1	Wheat	endoplasmic reticulum	87.21	58.23
VIT_07s0005g03350.t01	Wine grape	plastid	91.32	54.79
CDY32764	Canola	endoplasmic reticulum	72.15	42.36
CDY32878	Canola	endoplasmic reticulum, golgi, plasma membrane	70.78	41.55
CDY02811	Canola	plastid	43.84	21.72
CDY32993	Canola	plastid	43.84	21.72
CDY32711	Canola	plastid	43.84	21.67
CDY43863	Canola	plastid	43.84	21.67
CDX88669	Canola	plastid	43.84	21.62
CDY58562	Canola	plastid	43.84	21.62

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:1.4.2	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.1.1.3	GO:A0A078EBG5
EnsemblPlants:CDX98109	ProteinID:CDX98109	ProteinID:CDX98109.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975
GO:GO:0006108	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016615
GO:GO:0016616	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00105494001	InterPro:IPR015955	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N
InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS	InterPro:Malate_DH_type2	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866
ScanProsite:PS00068	PANTHER:PTHR23382	PANTHER:PTHR23382:SF7	MetaCyc:PWY-1622	MetaCyc:PWY-5392	MetaCyc:PWY-561
MetaCyc:PWY-5690	MetaCyc:PWY-5913	MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7115	MetaCyc:PWY-7383
SUPFAM:SSF51735	SUPFAM:SSF56327	UniParc:UPI0004EEE098	:	:	:

Description

BnaA06g08600D

Coordinates

chrLK031902:+:1093166..1094238

Molecular Weight (calculated)

23369.5 Da

IEP (calculated)

7.558

GRAVY (calculated)

0.052

Length

219 amino acids

Sequence
(BLAST)

001: MAKDPVRVLV TGAAGQIGYA LVPMIARGIM LGADQPVILH MLDIPPAAEA LNGVKMELID AAFPLLKGVV ATTDAVEGCT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQAAALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNITCLTRLD HNRALGQVSE RLSVPVSDVK NVIIWGNHSS SQYPDVNHAS
201: VKTSSGEKPV RELVKDDEW

Best Arabidopsis Sequence Match ( AT1G04410.1 )
(BLAST)

001: MAKEPVRVLV TGAAGQIGYA LVPMIARGIM LGADQPVILH MLDIPPAAEA LNGVKMELID AAFPLLKGVV ATTDAVEGCT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQAAALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNISCLTRLD HNRALGQISE RLSVPVSDVK NVIIWGNHSS SQYPDVNHAK
201: VQTSSGEKPV RELVKDDAWL DGEFISTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVL GTPEGTFVSM GVYSDGSYSV PSGLIYSFPV TCRNGDWSIV
301: QGLPIDEVSR KKMDLTAEEL KEEKDLAYSC LS

Arabidopsis Description

MDH1Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178W4H0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.