CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04410.1	CDY32970	AT5G42980.1	15352244
AT1G04410.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89826	Canola	peroxisome	99.7	99.7
Bra015314.1-P	Field mustard	peroxisome	98.49	98.49
CDY15504	Canola	cytosol, endoplasmic reticulum, peroxisome	96.69	96.69
CDY43609	Canola	peroxisome	96.39	96.39
CDY67454	Canola	cytosol, endoplasmic reticulum, peroxisome	96.08	96.08
CDY32953	Canola	peroxisome	96.08	96.08
AT1G04410.1	Thale cress	peroxisome	95.78	95.78
CDX98109	Canola	cytosol, endoplasmic reticulum, peroxisome	62.95	95.43
Solyc09g090140.2.1	Tomato	plastid	93.37	93.37
PGSC0003DMT400044217	Potato	cytosol	93.07	93.07
Zm00001d032695_P001	Maize	plasma membrane	90.96	90.96
EER94077	Sorghum	peroxisome	90.36	90.36
VIT_07s0005g03360.t01	Wine grape	extracellular	90.06	90.06
KRH31702	Soybean	endoplasmic reticulum	88.86	89.94
HORVU1Hr1G041250.5	Barley	extracellular	90.06	89.79
TraesCS1D01G153900.1	Wheat	golgi, plastid	90.06	89.79
TraesCS1B01G172400.1	Wheat	golgi	90.06	89.79
KRH69119	Soybean	mitochondrion, nucleus	89.76	89.76
GSMUA_Achr4P21920_001	Banana	cytosol, endoplasmic reticulum, peroxisome	89.16	89.16
GSMUA_Achr5P03900_001	Banana	plasma membrane	88.86	88.86
Os10t0478200-01	Rice	extracellular	88.86	88.86
TraesCS1A01G155200.1	Wheat	endoplasmic reticulum	87.65	88.72
Zm00001d014030_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	83.13	88.46
VIT_07s0005g03350.t01	Wine grape	plastid	90.06	81.92
CDY32764	Canola	endoplasmic reticulum	70.48	62.73
CDY32878	Canola	endoplasmic reticulum, golgi, plasma membrane	70.18	62.47
CDY32993	Canola	plastid	40.36	30.32
CDY43863	Canola	plastid	40.36	30.25
CDY58562	Canola	plastid	40.36	30.18
CDX88669	Canola	plastid	40.06	29.95
CDY02811	Canola	plastid	39.76	29.86
CDY32711	Canola	plastid	39.76	29.8

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:1.4.2	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.1.1.3	GO:A0A078FUV8
UniProt:A0A078FUV8	EnsemblPlants:CDY18230	ProteinID:CDY18230	ProteinID:CDY18230.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0019752	GO:GO:0030060
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00002760001	InterPro:IPR015955	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N
InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS	InterPro:Malate_DH_NAD-dep_euk	InterPro:Malate_DH_type2	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056
PFAM:PF02866	PIRSF:PIRSF000102	ScanProsite:PS00068	PANTHER:PTHR23382	PANTHER:PTHR23382:SF7	MetaCyc:PWY-1622
MetaCyc:PWY-5392	MetaCyc:PWY-561	MetaCyc:PWY-5690	MetaCyc:PWY-5913	MetaCyc:PWY-6728	MetaCyc:PWY-6969
MetaCyc:PWY-7115	MetaCyc:PWY-7383	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01758	TIGRFAMs:TIGR01759
UniParc:UPI0004EEF9B2	SEG:seg	:	:	:	:

Description

BnaC05g02530DMalate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A078FUV8]

Coordinates

chrLK032083:-:436646..439093

Molecular Weight (calculated)

35730.3 Da

IEP (calculated)

6.514

GRAVY (calculated)

-0.013

Length

332 amino acids

Sequence
(BLAST)

001: MAKEPVRVLV TGAAGQIGYA LVPMIARGIM LGADQPVILH MLDIPPAAEA LNGVKMELID AAFPLLKGVV ATTDAVEGCT GVNVAVMVGG FPRKEGMERK
101: DVMTKNVSIY KSQATALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNITCLTRLD HNRALGQISE RLSVPVSDVK NVIIWGNHSS SQYPDVNHAK
201: VQTPAGEKPV RELVKNDEYL NGEFITTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVL GTPEGTFVSM GVYSDGSYDV PAGLIYSFPV TCRNGEWSIV
301: QGLPIDEMSR KKMDLTAEEL KEEKDLAYSC LS

Best Arabidopsis Sequence Match ( AT1G04410.1 )
(BLAST)

001: MAKEPVRVLV TGAAGQIGYA LVPMIARGIM LGADQPVILH MLDIPPAAEA LNGVKMELID AAFPLLKGVV ATTDAVEGCT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQAAALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNISCLTRLD HNRALGQISE RLSVPVSDVK NVIIWGNHSS SQYPDVNHAK
201: VQTSSGEKPV RELVKDDAWL DGEFISTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVL GTPEGTFVSM GVYSDGSYSV PSGLIYSFPV TCRNGDWSIV
301: QGLPIDEVSR KKMDLTAEEL KEEKDLAYSC LS

Arabidopsis Description

MDH1Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178W4H0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.