Factsheet for AT1G04410.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15504	Canola	cytosol, endoplasmic reticulum, peroxisome	96.99	96.99
CDY67454	Canola	cytosol, endoplasmic reticulum, peroxisome	96.39	96.39
Bra030569.1-P	Field mustard	cytosol, golgi, peroxisome	96.08	96.08
CDX89826	Canola	peroxisome	96.08	96.08
CDY18230	Canola	peroxisome	95.78	95.78
Bra015314.1-P	Field mustard	peroxisome	94.88	94.88
AT5G43330.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	93.98	93.98
Solyc09g090140.2.1	Tomato	plastid	93.07	93.07
PGSC0003DMT400044217	Potato	cytosol	92.77	92.77
Zm00001d032695_P001	Maize	plasma membrane	90.96	90.96
EER94077	Sorghum	peroxisome	90.36	90.36
HORVU1Hr1G041250.5	Barley	extracellular	90.36	90.09
TraesCS1D01G153900.1	Wheat	golgi, plastid	90.06	89.79
VIT_07s0005g03360.t01	Wine grape	extracellular	89.76	89.76
KRH31702	Soybean	endoplasmic reticulum	88.55	89.63
KRH69119	Soybean	mitochondrion, nucleus	89.46	89.46
TraesCS1B01G172400.1	Wheat	golgi	89.46	89.19
GSMUA_Achr5P03900_001	Banana	plasma membrane	88.86	88.86
GSMUA_Achr4P21920_001	Banana	cytosol, endoplasmic reticulum, peroxisome	88.86	88.86
Zm00001d014030_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	83.43	88.78
Os10t0478200-01	Rice	extracellular	88.55	88.55
TraesCS1A01G155200.1	Wheat	endoplasmic reticulum	87.05	88.11
VIT_07s0005g03350.t01	Wine grape	plastid	89.76	81.64
AT5G56720.1	Thale cress	cytosol, endoplasmic reticulum	71.99	64.25
AT5G58330.1	Thale cress	plastid	42.17	31.6

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:1.4.2	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.1.1.3	PDB:5NUE
PDB:5NUF	EntrezGene:839527	UniProt:A0A178W4H0	ProteinID:AAB70434.1	ProteinID:AEE27694.1	ArrayExpress:AT1G04410
EnsemblPlantsGene:AT1G04410	RefSeq:AT1G04410	TAIR:AT1G04410	RefSeq:AT1G04410-TAIR-G	EnsemblPlants:AT1G04410.1	TAIR:AT1G04410.1
EMBL:AY050374	EMBL:AY065134	EMBL:AY081563	EMBL:AY088023	EMBL:AY133655	Unigene:At.11041
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005576
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774
GO:GO:0005886	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006107	GO:GO:0006108
GO:GO:0006139	GO:GO:0006734	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009506
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009628	GO:GO:0009651	GO:GO:0009719
GO:GO:0009735	GO:GO:0009987	GO:GO:0010043	GO:GO:0016020	GO:GO:0016491	GO:GO:0016615
GO:GO:0016616	GO:GO:0019752	GO:GO:0030060	GO:GO:0046686	GO:GO:0048046	GO:GO:0055114
InterPro:IPR015955	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS
InterPro:Malate_DH_NAD-dep_euk	InterPro:Malate_DH_type2	InterPro:NAD(P)-bd_dom_sf	RefSeq:NP_171936.1	ProteinID:OAP13148.1	UniProt:P93819
PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102	PO:PO:0000005	PO:PO:0000013	PO:PO:0000037
PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001170
PO:PO:0001185	PO:PO:0004507	PO:PO:0005020	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098
PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007131	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009001	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010
PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046
PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137
PO:PO:0025022	PO:PO:0025281	ScanProsite:PS00068	PANTHER:PTHR23382	PANTHER:PTHR23382:SF7	SUPFAM:SSF51735
SUPFAM:SSF56327	TIGRFAMs:TIGR01758	TIGRFAMs:TIGR01759	UniParc:UPI0000000BBC	SEG:seg	:

Description

MDH1Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178W4H0]

Coordinates

chr1:-:1188995..1191458

Molecular Weight (calculated)

35573.0 Da

IEP (calculated)

6.513

GRAVY (calculated)

0.013

Length

332 amino acids

Sequence
(BLAST)

001: MAKEPVRVLV TGAAGQIGYA LVPMIARGIM LGADQPVILH MLDIPPAAEA LNGVKMELID AAFPLLKGVV ATTDAVEGCT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQAAALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNISCLTRLD HNRALGQISE RLSVPVSDVK NVIIWGNHSS SQYPDVNHAK
201: VQTSSGEKPV RELVKDDAWL DGEFISTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVL GTPEGTFVSM GVYSDGSYSV PSGLIYSFPV TCRNGDWSIV
301: QGLPIDEVSR KKMDLTAEEL KEEKDLAYSC LS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.