Factsheet for Bra030569.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, cytosol

Predictor Summary:

cytosol 2
plastid 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, peroxisome
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	peroxisome
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra027469.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04410.1	Bra027469.1-P	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15504	Canola	cytosol, endoplasmic reticulum, peroxisome	99.1	99.1
AT1G04410.1	Thale cress	peroxisome	96.08	96.08
Bra027485.1-P	Field mustard	peroxisome	95.78	95.78
Bra015314.1-P	Field mustard	peroxisome	95.18	95.18
Solyc09g090140.2.1	Tomato	plastid	91.87	91.87
PGSC0003DMT400044217	Potato	cytosol	91.57	91.57
Zm00001d032695_P001	Maize	plasma membrane	90.96	90.96
EER94077	Sorghum	peroxisome	90.96	90.96
TraesCS1D01G153900.1	Wheat	golgi, plastid	89.76	89.49
VIT_07s0005g03360.t01	Wine grape	extracellular	89.46	89.46
Zm00001d014030_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	84.04	89.42
KRH31702	Soybean	endoplasmic reticulum	88.25	89.33
HORVU1Hr1G041250.5	Barley	extracellular	89.46	89.19
KRH69119	Soybean	mitochondrion, nucleus	89.16	89.16
TraesCS1B01G172400.1	Wheat	golgi	89.16	88.89
GSMUA_Achr4P21920_001	Banana	cytosol, endoplasmic reticulum, peroxisome	88.86	88.86
GSMUA_Achr5P03900_001	Banana	plasma membrane	88.55	88.55
Os10t0478200-01	Rice	extracellular	88.25	88.25
TraesCS1A01G155200.1	Wheat	endoplasmic reticulum	86.75	87.8
VIT_07s0005g03350.t01	Wine grape	plastid	89.46	81.37
Bra002797.1-P	Field mustard	endoplasmic reticulum	70.48	62.73
Bra002660.1-P	Field mustard	plastid	40.66	30.54
Bra006772.1-P	Field mustard	plastid	40.36	30.18
Bra020374.1-P	Field mustard	plastid	40.06	30.02

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:1.4.2	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.1.1.3	EnsemblPlantsGene:Bra030569
EnsemblPlants:Bra030569.1	EnsemblPlants:Bra030569.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0006091
GO:GO:0006099	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0016615	GO:GO:0016616	GO:GO:0019752	GO:GO:0030060	GO:GO:0055114	InterPro:IPR015955
InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	UniProt:M4EP49	InterPro:Malate_DH_AS
InterPro:Malate_DH_NAD-dep_euk	InterPro:Malate_DH_type2	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102
ScanProsite:PS00068	PANTHER:PTHR23382	PANTHER:PTHR23382:SF7	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01758
TIGRFAMs:TIGR01759	UniParc:UPI00025456F5	SEG:seg	:	:	:

Description

AT5G43330 (E=3e-177) | malate dehydrogenase, cytosolic, putative

Coordinates

chrA08:+:21277688..21279644

Molecular Weight (calculated)

35842.4 Da

IEP (calculated)

6.514

GRAVY (calculated)

0.010

Length

332 amino acids

Sequence
(BLAST)

001: MAKEPVRVLV TGAAGQIGYA LVPMIARGIM LGADQPVILH MMDIAFAAEA LNGVKMELID AAFPLLKGVV ATTDAVEGCT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQAAALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNITCLTRLD HNRALGQISE RLSVPVSDVK NVIIWGNHSS TQYPDVNHAK
201: VQTSFGEKPV RELVKNDEWL NGEFITTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVL GTPEGTFVSM GVYSDGSYNV PSGLIYSFPV TCRNGEWDIV
301: QGLPIDEVSR KKMDLTAEEL KEEKDLAYSC LS

Best Arabidopsis Sequence Match ( AT5G43330.1 )
(BLAST)

001: MAKEPVRVLV TGAAGQIGYA LVPMIARGIM LGADQPVILH MLDIPFAAEA LNGVKMELVD AAFPLLKGVV ATTDAVEACT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQASALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNITCLTRLD HNRALGQVSE RLSVPVSDVK NVIIWGNHSS TQYPDVNHAT
201: VKTSVGEKPV RELVKNDEWL NGEFISTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVV GTPEGTFVSM GVYSDGSYNV PAGLIYSFPV TCRNGEWTIV
301: QGLPIDDASR KKMDLTAEEL KEEKDLAYSC LS

Arabidopsis Description

MDH2Malate dehydrogenase 2, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:P57106]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.