Factsheet for HORVU1Hr1G041250.5

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
peroxisome 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, peroxisome, secretory
iPSORT:	secretory
MultiLoc:	peroxisome
Predotar:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	vacuole

extracellular: 26928395

msms PMID: 26928395 doi

A Sultan, B Andersen, B Svensson, C Finnie

Agricultural and Environmental Proteomics, Department of Systems Biology, Technical University of Denmark , Søltofts Plads, Building 224, DK-2800 Kgs. Lyngby, Denmark., Enzyme and Protein Chemistry, Department of Systems Biology, Technical University of Denmark , Elektrovej, Building 375, DK-2800 Kgs. Lyngby, Denmark.

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G075560.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04410.1	HORVU1Hr1G075560.1	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G172400.1	Wheat	golgi	97.3	97.3
TraesCS1D01G153900.1	Wheat	golgi, plastid	96.7	96.7
TraesCS1A01G155200.1	Wheat	endoplasmic reticulum	93.69	95.12
Zm00001d032695_P001	Maize	plasma membrane	93.69	93.98
Os10t0478200-01	Rice	extracellular	92.79	93.07
EER94077	Sorghum	peroxisome	92.79	93.07
Solyc09g090140.2.1	Tomato	plastid	90.99	91.27
AT5G43330.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	90.69	90.96
PGSC0003DMT400044217	Potato	cytosol	90.69	90.96
CDX98109	Canola	cytosol, endoplasmic reticulum, peroxisome	59.76	90.87
CDY32953	Canola	peroxisome	90.39	90.66
Bra027485.1-P	Field mustard	peroxisome	90.39	90.66
CDY43609	Canola	peroxisome	90.09	90.36
AT1G04410.1	Thale cress	peroxisome	90.09	90.36
VIT_07s0005g03360.t01	Wine grape	extracellular	90.09	90.36
KRH31702	Soybean	endoplasmic reticulum	88.89	90.24
CDY15504	Canola	cytosol, endoplasmic reticulum, peroxisome	89.79	90.06
CDX89826	Canola	peroxisome	89.79	90.06
GSMUA_Achr4P21920_001	Banana	cytosol, endoplasmic reticulum, peroxisome	89.79	90.06
CDY18230	Canola	peroxisome	89.79	90.06
Zm00001d014030_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	84.08	89.74
GSMUA_Achr5P03900_001	Banana	plasma membrane	89.19	89.46
Bra030569.1-P	Field mustard	cytosol, golgi, peroxisome	89.19	89.46
CDY67454	Canola	cytosol, endoplasmic reticulum, peroxisome	89.19	89.46
KRH69119	Soybean	mitochondrion, nucleus	88.89	89.16
Bra015314.1-P	Field mustard	peroxisome	88.59	88.86
VIT_07s0005g03350.t01	Wine grape	plastid	90.09	82.19
HORVU4Hr1G090080.1	Barley	cytosol	39.94	36.74
HORVU7Hr1G060260.5	Barley	plastid	39.94	30.72

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:1.4.2	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.1.1.3	EMBL:AK358926
EMBL:AK370167	UniProt:F2D4W6	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0006091
GO:GO:0006099	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0016615	GO:GO:0016616	GO:GO:0019752	GO:GO:0030060	GO:GO:0055114	EnsemblPlantsGene:HORVU1Hr1G041250
EnsemblPlants:HORVU1Hr1G041250.5	InterPro:IPR015955	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C
InterPro:Malate_DH_AS	InterPro:Malate_DH_NAD-dep_euk	InterPro:Malate_DH_type2	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866
PIRSF:PIRSF000102	ScanProsite:PS00068	PANTHER:PTHR23382	PANTHER:PTHR23382:SF7	SUPFAM:SSF51735	SUPFAM:SSF56327
TIGRFAMs:TIGR01758	TIGRFAMs:TIGR01759	UniParc:UPI0002005BDA	SEG:seg	:	:

Description

Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:F2D4W6]

Coordinates

chrchr1H:-:293656745..293659814

Molecular Weight (calculated)

35602.9 Da

IEP (calculated)

5.682

GRAVY (calculated)

0.047

Length

333 amino acids

Sequence
(BLAST)

001: MAAKEPMRVL VTGAAGQIGY ALVPMIARGI MLGADQPVIL HMLDIEFAAE ALKGVKMELV DAAFPLLKGV VATTDPVEAC TGVNVAVMVG GFPRKEGMER
101: KDVMTKNVSI YKSQASALEA HAAPNCKVLV VANPANTNAL ILKEFAPSIP EKNISCLTRL DHNRALGQIS ERLNVQVSDV KNAIIWGNHS SSQYPDVNHA
201: TVKTASGEKP VRELVQDDEW LNGEFIATVQ QRGAAIIKAR KLSSALSAAS SACDHIRDWV LGTPEGTFVS MGVYSDGSYG VPAGLIYSFP VTCSGGDWTI
301: VQGLPIDEFS RKKMDATAQE LSEEKALAYS CLE

Best Arabidopsis Sequence Match ( AT5G43330.1 )
(BLAST)

001: MAKEPVRVLV TGAAGQIGYA LVPMIARGIM LGADQPVILH MLDIPFAAEA LNGVKMELVD AAFPLLKGVV ATTDAVEACT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQASALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNITCLTRLD HNRALGQVSE RLSVPVSDVK NVIIWGNHSS TQYPDVNHAT
201: VKTSVGEKPV RELVKNDEWL NGEFISTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVV GTPEGTFVSM GVYSDGSYNV PAGLIYSFPV TCRNGEWTIV
301: QGLPIDDASR KKMDLTAEEL KEEKDLAYSC LS

Arabidopsis Description

MDH2Malate dehydrogenase 2, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:P57106]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.